ArticleComputational and mathematical methods in medicine2022
Phage_UniR_LGBM: Phage Virion Proteins Classification with UniRep Features and LightGBM Model.
Article in Computational and mathematical methods in medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
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- Essential genes identification model based on sequence feature map and graph convolutional neural network.BMC genomics · 2024Article
- TCellR2Vec: efficient feature selection for TCR sequences for cancer classification.PeerJ. Computer science · 2024Article
- Identify Diabetes-related Targets based on ForgeNet_GPC.Current computer-aided drug design · 2024Article
- Advancing non-alcoholic fatty liver disease prediction: a comprehensive machine learning approach integrating SHAP interpretability and multi-cohort validation.Frontiers in endocrinology · 2024Article
- Machine learning-based approaches for ubiquitination site prediction in human proteins.BMC bioinformatics · 2023Article
- Optimizing Hyperparameter Tuning in Machine Learning to Improve the Predictive Performance of Cross-Species N6-Methyladenosine Sites.ACS omega · 2023Article
- A Machine Learning Method to Identify Umami Peptide Sequences by Using Multiplicative LSTM Embedded Features.Foods (Basel, Switzerland) · 2023Article
- ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.Briefings in bioinformatics · 2023Article
- Construction of Osteosarcoma Diagnosis Model by Random Forest and Artificial Neural Network.Journal of personalized medicine · 2023Article
- Cotton leaf segmentation with composite backbone architecture combining convolution and attention.Frontiers in plant science · 2023Article
- Predicting need for heart failure advanced therapies using an interpretable tropical geometry-based fuzzy neural network.PloS one · 2023Article
- Construction of a neural network diagnostic model for renal fibrosis and investigation of immune infiltration characteristics.Frontiers in immunology · 2023Article
- e-TSN: an interactive visual exploration platform for target-disease knowledge mapping from literature.Briefings in bioinformatics · 2022Article
- Identify Bitter Peptides by Using Deep Representation Learning Features.International journal of molecular sciences · 2022Article
- Symptom recognition of disease and insect damage based on Mask R-CNN, wavelet transform, and F-RNet.Frontiers in plant science · 2022Article
- The study on the morphological changes of oropharynx in patients with complete unilateral cleft lip and palate after palatopharyngeal closure.Frontiers in neuroscience · 2022Article
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Authors and funding
4 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Phage, the most prevalent creature on the planet, serves a variety of critical roles. Phage's primary role is to facilitate gene-to-gene communication. The phage proteins can be defined as the virion proteins and the nonvirion ones. Nowadays, experimental identification is a difficult process that necessitates a significant amount of laboratory time and expense. Considering such situation, it is critical to design practical calculating techniques and develop well-performance tools. In this work, the Phage_UniR_LGBM has been proposed to classify the virion proteins. In detailed, such model utilizes the UniRep as the feature and the LightGBM algorithm as the classification model. And then, the training data train the model, and the testing data test the model with the cross-validation. The Phage_UniR_LGBM was compared with the several state-of-the-art features and classification algorithms. The performances of the Phage_UniR_LGBM are 88.51% in Sp,89.89% in Sn, 89.18% in Acc, 0.7873 in MCC, and 0.8925 in F1 score.
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