Evidence map›Paper›PMID 35462762›Full record

ArticlePeerJ2022

Concentration and quantification of

Suwimon Taengphu, Pattanapon Kayansamruaj, Yasuhiko Kawato, Jerome Delamare-Deboutteville, Chadag Vishnumurthy Mohan, Ha Thanh Dong, Saengchan Senapin

Abstract read
In one paragraph

Article in PeerJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Suwimon TaengphuFish Health Platform, Center of Excellence for Shrimp Molecular Biology and Biotechnology (Centex Shrimp), Mahidol University, Phayathai, Bangkok, Thailand.
Pattanapon KayansamruajCenter of Excellence in Aquatic Animal Health Management, Faculty of Fisheries, Kasetsart University, Chatuchak, Bangkok, Thailand.
Yasuhiko KawatoPathology Division, Nansei Field Station, Fisheries Technology Institute, Japan Fisheries Research and Education Agency, Minami-Ise, Mie, Japan.
Jerome Delamare-DebouttevilleWorldFish, Bayan Lepas, Penang, Malaysia.
Chadag Vishnumurthy MohanWorldFish, Bayan Lepas, Penang, Malaysia.ORCID 0000-0002-2574-284X
Ha Thanh DongSchool of Environment, Resources and Development, Asian Institute of Technology, Klong Luang, Pathum Thani, Thailand.
Saengchan SenapinFish Health Platform, Center of Excellence for Shrimp Molecular Biology and Biotechnology (Centex Shrimp), Mahidol University, Phayathai, Bangkok, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Methods: Here, we report a simple iron flocculation method for concentrating viruses in water, together with a newly-developed hydrolysis probe quantitative RT-qPCR method for the detection and quantification of TiLV. Results: The RT-qPCR method designed to target a conserved region of the TiLV genome segment 9 has a detection limit of 10 viral copies per µL of template. The method had a 100% analytical specificity and sensitivity for TiLV. The optimized iron flocculation method was able to recover 16.11 ± 3.3% of the virus from water samples spiked with viral cultures. Tilapia and water samples were collected for use in the detection and quantification of TiLV disease during outbreaks in an open-caged river farming system and two earthen fish farms. TiLV was detected from both clinically sick and asymptomatic fish. Most importantly, the virus was successfully detected from water samples collected from different locations in the affected farms (

Indexed as

Fish DiseasesRNA VirusesTilapiaVirusesAnimalsFlocculationWaterWaterEnvironmental RNAeRNAIron flocculationQuantificationRT-qPCRTilapia lake virusTiLVViral concentration

Identifiers

PMID35462762
PMCPMC9022640

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.