Evidence map›Paper›PMID 35460275›Full record

ArticleThe New phytologist2022

PICKLE associates with histone deacetylase 9 to mediate vegetative phase change in Arabidopsis.

Tieqiang Hu, Darren Manuela, Valerie Hinsch, Mingli Xu

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

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  7. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tieqiang HuDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Darren ManuelaDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Valerie HinschDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.
Mingli XuDepartment of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA.ORCID 0000-0001-7997-573X
University of South Carolina · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The juvenile-to-adult vegetative phase change in flowering plants is mediated by a decrease in miR156 levels. Downregulation of MIR156A/MIR156C, the two major sources of miR156, is accompanied by a decrease in acetylation of histone 3 lysine 27 (H3K27ac) and an increase in trimethylation of H3K27 (H3K27me3) at MIR156A/MIR156C in Arabidopsis. Here, we show that histone deacetylase 9 (HDA9) is recruited to MIR156A/MIR156C during the juvenile phase and associates with the CHD3 chromatin remodeler PICKLE (PKL) to erase H3K27ac at MIR156A/MIR156C. H2Aub and H3K27me3 become enriched at MIR156A/MIR156C, and the recruitment of Polycomb Repressive Complex 2 (PRC2) to MIR156A/MIR156C is partially dependent on the activities of PKL and HDA9. Our results suggest that PKL associates with histone deacetylases to erase H3K27ac and promote PRC1 and PRC2 activities to mediate vegetative phase change and maintain plants in the adult phase after the phase transition.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHistone DeacetylasesHistonesArabidopsis ProteinsHDA9 protein, ArabidopsisHistone DeacetylasesHistonesArabidopsisH2AubH3K27acH3K27me3HDA9miR156PKLvegetative phase change

Identifiers

PMID35460275
PMCPMC9324081
OpenAlexW4224314730

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.