Evidence map›Paper›PMID 35456370›Full record

ArticleGenes2022

Genomic Predictions for Common Bunt, FHB, Stripe Rust, Leaf Rust, and Leaf Spotting Resistance in Spring Wheat.

Kassa Semagn, Muhammad Iqbal, Diego Jarquin, José Crossa, Reka Howard, Izabela Ciechanowska, Maria Antonia Henriquez, Harpinder Randhawa, Reem Aboukhaddour, Brent D McCallum and 5 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Artificial Intelligence-Assisted Breeding for Plant Disease Resistance.International journal of molecular sciences · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Toward combining qualitative race-specific and quantitative race-nonspecific disease resistance by genomic selection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  10. Article
  11. Article
  12. Comparison of single-trait and multi-trait genomic predictions on agronomic and disease resistance traits in spring wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Kassa SemagnDepartment of Agricultural, Food, and Nutritional Science, 4-10 Agriculture-Forestry Centre, University of Alberta, Edmonton, AB T6G 2P5, Canada.ORCID 0000-0001-6486-5685
Muhammad IqbalDepartment of Agricultural, Food, and Nutritional Science, 4-10 Agriculture-Forestry Centre, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Diego JarquinAgronomy Department, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-5098-2060
José CrossaInternational Maize and Wheat Improvement Center (CIMMYT), Apdo. Postal 6-641, Mexico 06600, Mexico.
Reka HowardDepartment of Statistics, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.
Izabela CiechanowskaDepartment of Agricultural, Food, and Nutritional Science, 4-10 Agriculture-Forestry Centre, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Maria Antonia HenriquezMorden Research and Development Centre, Agriculture and Agri-Food Canada, 101 Route 100, Morden, MB R6M 1Y5, Canada.
Harpinder RandhawaLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403-1st Avenue South, Lethbridge, AB T1J 4B1, Canada.
Reem AboukhaddourLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403-1st Avenue South, Lethbridge, AB T1J 4B1, Canada.
Brent D McCallumMorden Research and Development Centre, Agriculture and Agri-Food Canada, 101 Route 100, Morden, MB R6M 1Y5, Canada.
Anita L Brûlé-BabelDepartment of Plant Science, University of Manitoba, 66 Dafoe Road, Winnipeg, MB R3T 2N2, Canada.ORCID 0000-0001-9721-546X
Alireza NavabiDepartment of Plant Agriculture, Crop Science Building, University of Guelph, Guelph, ON N1G 2W1, Canada.
Amidou N'DiayeCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.ORCID 0000-0001-7769-7801
Curtis PozniakCrop Development Centre and Department of Plant Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK S7N 5A8, Canada.ORCID 0000-0002-7536-3856
Dean SpanerDepartment of Agricultural, Food, and Nutritional Science, 4-10 Agriculture-Forestry Centre, University of Alberta, Edmonton, AB T6G 2P5, Canada.
Agriculture and Agri-Food Canada · CAUniversity of Alberta · CAUniversity of Saskatchewan · CACentro Internacional de Mejoramiento de Maíz Y Trigo · MXUniversity of Florida · USUniversity of Guelph · CAUniversity of Manitoba · CAUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some studies have investigated the potential of genomic selection (GS) on stripe rust, leaf rust, Fusarium head blight (FHB), and leaf spot in wheat, but none of them have assessed the effect of the reaction norm model that incorporated GE interactions. In addition, the prediction accuracy on common bunt has not previously been studied. Here, we investigated within-population prediction accuracies using the baseline M1 model and two reaction norm models (M2 and M3) with three random cross-validation (CV1, CV2, and CV0) schemes. Three Canadian spring wheat populations were evaluated in up to eight field environments and genotyped with 3158, 5732, and 23,795 polymorphic markers. The M3 model that incorporated GE interactions reduced residual variance by an average of 10.2% as compared with the main effect M2 model and increased prediction accuracies on average by 2-6%. In some traits, the M3 model increased prediction accuracies up to 54% as compared with the M2 model. The average prediction accuracies of the M3 model with CV1, CV2, and CV0 schemes varied from 0.02 to 0.48, from 0.25 to 0.84, and from 0.14 to 0.87, respectively. In both CV2 and CV0 schemes, stripe rust in all three populations, common bunt and leaf rust in two populations, as well as FHB severity, FHB index, and leaf spot in one population had high to very high (0.54-0.87) prediction accuracies. This is the first comprehensive genomic selection study on five major diseases in spring wheat.

Indexed as

BasidiomycotaFusariumCanadaDisease ResistancePlant DiseasesTriticum90K arrayDArTseqdisease resistancegenomic selectionprairie provincesprediction accuracypriority wheat diseaseSNP

Identifiers

PMID35456370
PMCPMC9032109
OpenAlexW4224282392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.