Evidence map›Paper›PMID 35456079›Full record

ArticlePathogens (Basel, Switzerland)2022

An Assessment of Diagnostic Assays and Sample Types in the Detection of an Attenuated Genotype 5 African Swine Fever Virus in European Pigs over a 3-Month Period.

Karyn A Havas, Andrey E Gogin, Julia V Basalaeva, Irina P Sindryakova, Olga L Kolbasova, Ilya A Titov, Valentina M Lyska, Sergey Y Morgunov, Mikhail E Vlasov, Timofey A Sevskikh and 10 more

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Comparison of diaphragm meat juice and muscle swab samples to spleen and spleen swab samples for the detection of African swine fever viral nucleic acid.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Karyn A HavasPipestone Research, Pipestone Holdings, Pipestone, MN 56164, USA.ORCID 0000-0002-7370-0708
Andrey E GoginFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.ORCID 0000-0003-3224-8193
Julia V BasalaevaSwine Division, Cherkizovo LLC, 399870 Lipetsk, Russia.
Irina P SindryakovaFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.ORCID 0000-0002-5947-9402
Olga L KolbasovaFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Ilya A TitovFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.ORCID 0000-0002-5821-8980
Valentina M LyskaFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Sergey Y MorgunovFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Mikhail E VlasovFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Timofey A SevskikhFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Elena Y PivovaFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
Dmitry A KudrjashovFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.ORCID 0000-0002-6793-0195
Kent DoolittleIDEXX Laboratories, Westbrook, ME 04092, USA.
Silvia ZimmermanIDEXX Laboratories, Westbrook, ME 04092, USA.
Wendy WitbeckIDEXX Laboratories, Westbrook, ME 04092, USA.
Luis G Gimenez-LirolaInnoceleris LLC, Ames, IA 50014, USA.
Joel NeremPipestone Research, Pipestone Holdings, Pipestone, MN 56164, USA.
Gordon D SpronkPipestone Research, Pipestone Holdings, Pipestone, MN 56164, USA.
Jeffrey J ZimmermanDepartment of Veterinary Diagnostic and Production Animal Medicine, College of Veterinary Medicine, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0002-8107-2422
Alexey D SeredaFederal Research Center for Virology and Microbiology (FRCVM), 601125 Volginsky, Russia.
National Research Institute for Veterinary Virology and Microbiology of Russia · RUIDEXX Laboratories (United States) · USPipestone (United States) · USIowa State University · US

Funding

Cherkizovo LLC N/ANational Pork Board 20-176
6 · The paper itself

Abstract

African swine fever virus causes hemorrhagic disease in swine. Attenuated strains are reported in Africa, Europe, and Asia. Few studies on the diagnostic detection of attenuated ASF viruses are available. Two groups of pigs were inoculated with an attenuated ASFV. Group 2 was also vaccinated with an attenuated porcine reproductive and respiratory syndrome virus vaccine. Commercially available ELISA, as well as extraction and qPCR assays, were used to detect antibodies in serum and oral fluids (OF) and nucleic acid in buccal swabs, tonsillar scrapings, OF, and blood samples collected over 93 days, respectively. After 12 dpi, serum (88.9% to 90.9%) in Group 1 was significantly better for antibody detection than OF (0.7% to 68.4%). Group 1's overall qPCR detection was highest in blood (48.7%) and OF (44.2%), with the highest detection in blood (85.2%) from 8 to 21 days post inoculation (dpi) and in OF (83.3%) from 1 to 7 dpi. Group 2's results were not significantly different from Group 1, but detection rates were lower overall. Early detection of attenuated ASFV variants requires active surveillance in apparently healthy animals and is only reliable at the herd level. Likewise, antibody testing will be needed to prove freedom from disease.

Indexed as

African swine feverattenuationdetectiondiagnostics

Identifiers

PMID35456079
PMCPMC9027431
OpenAlexW4220749082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.