Evidence map›Paper›PMID 35455361›Full record

ArticleVaccines2022

Transcriptomics of Acute DENV-Specific CD8+ T Cells Does Not Support Qualitative Differences as Drivers of Disease Severity.

Alba Grifoni, Hannah Voic, Esther Dawen Yu, Jose Mateus, Kai Mei Yan Fung, Alice Wang, Grégory Seumois, Aruna D De Silva, Rashika Tennekon, Sunil Premawansa and 9 more

Open access · goldAbstract read
In one paragraph

Article in Vaccines, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. T Cell Responses During Dengue Infection.Current topics in microbiology and immunology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. A Population of CD4Viruses · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Alba GrifoniLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0002-2209-5966
Hannah VoicLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Esther Dawen YuLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0002-3970-3753
Jose MateusLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Kai Mei Yan FungLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Alice WangLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Grégory SeumoisLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Aruna D De SilvaLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0001-5291-9543
Rashika TennekonDepartment of Paraclinical Sciences, Faculty of Medicine, General Sir John Kotelawala Defense University, Ratmalana 10390, Sri Lanka.
Sunil PremawansaDepartment of Zoology and Environment Sciences, University of Colombo, Colombo 00300, Sri Lanka.
Gayani PremawansaNorth Colombo Teaching Hospital, Ragama 11010, Sri Lanka.
Rashmi TippalagamaLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0001-6157-8592
Ananda WijewickramaNational Institute of Infectious Diseases, Gothatuwa, Angoda 10620, Sri Lanka.
Ashu ChawlaLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Jason GreenbaumLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Bjoern PetersLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Vijayanand PanduranganLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.
Daniela WeiskopfLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0003-2968-7371
Alessandro SetteLa Jolla Institute for Immunology (LJI), La Jolla, CA 92037, USA.ORCID 0000-0001-7013-2250
La Jolla Institute for Immunology · USColombo North Teaching Hospital · LKGeneral Sir John Kotelawala Defence University · LKUniversity of Colombo · LK

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2015 to 2026
$36.7M
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
National Institute of Allergy and Infectious Diseases AI118626NIAID NIH HHS U19 AI118626NIH HHS RR027366NIH HHS S10OD016262.
6 · The paper itself

Abstract

While several lines of evidence suggest a protective role of T cells against disease associated with Dengue virus (DENV) infection, their potential contribution to immunopathology in the acute phase of DENV infection remains controversial, and it has been hypothesized that the more severe form of the disease (dengue hemorrhagic fever, DHF) is associated with altered T cell responses. To address this question, we determined the transcriptomic profiles of DENV-specific CD8+ T cells in a cohort of 40 hospitalized dengue patients with either a milder form of the disease (dengue fever, DF) or a more severe disease form (dengue hemorrhagic fever, DHF). We found multiple transcriptomic signatures, one associated with DENV-specific interferon-gamma responding cells and two other gene signatures, one specifically associated with the acute phase and the other with the early convalescent phase. Additionally, we found no differences in quantity and quality of DENV-specific CD8+ T cells based on disease severity. Taken together with previous findings that did not detect altered DENV-specific CD4 T cell responses, the current analysis argues against alteration in DENV-specific T cell responses as being a correlate of immunopathology.

Indexed as

CD8+ T cellsDENVhemorrhagic diseasephenotypestranscriptome

Identifiers

PMID35455361
PMCPMC9029181
OpenAlexW4225911470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.