ReviewBiomolecules2022
Developments in Algorithms for Sequence Alignment: A Review.
Review in Biomolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- The sequence alignment problem: boundary conditions as the unifying principle.Briefings in bioinformatics · 2026Review
- PyamilySeq: exposing the fragility of conventional gene (re)clustering and prokaryotic pangenomic inference methods.NAR genomics and bioinformatics · 2026Article
- Adaptive Tracepoints for Pangenome Alignment Compression.bioRxiv : the preprint server for biology · 2026Article
- Protein Language Models: Applications and Perspectives.Journal of proteome research · 2026Review
- Reducing haystacks to needles-ViralClust: a Nextflow pipeline to cluster viral sequences.GigaScience · 2026Article
- deMEM: a novel divide-and-conquer framework based on de Bruijn graph for scalable multiple sequence alignment.GigaScience · 2026Article
- CLAP-HMM: a biologically constrained deep learning framework for resistance gene prediction in long DNA sequences.BMC biotechnology · 2025Article
- Uncovering position-specific patterns in codon and codon-pair usage in candidate genes associated with blood coagulation diseases.NAR genomics and bioinformatics · 2025Article
- Enzyme sequence optimisation via Gromov-Wasserstein Autoencoders integrating MSA techniques.Journal of enzyme inhibition and medicinal chemistry · 2025Article
- ReAlign-P: a vertical iterative realignment method for protein multiple sequence alignment.Bioinformatics (Oxford, England) · 2025Article
- bpRNA-CosMoS: a robust and efficient RNA structural comparison method using k-mer based cosine similarity.Bioinformatics (Oxford, England) · 2025Article
- ASVBM: Structural variant benchmarking with local joint analysis for multiple callsets.Computational and structural biotechnology journal · 2025Article
- Advances in post-processing methods for multiple sequence alignment.Frontiers in genetics · 2025Review
- A survey of k-mer methods and applications in bioinformatics.Computational and structural biotechnology journal · 2024Review
- ReAlign-N: an integrated realignment approach for multiple nucleic acid sequence alignment, combining global and local realignments.NAR genomics and bioinformatics · 2024Article
- The Historical Evolution and Significance of Multiple Sequence Alignment in Molecular Structure and Function Prediction.Biomolecules · 2024Review
- Revolutionizing Molecular Design for Innovative Therapeutic Applications through Artificial Intelligence.Molecules (Basel, Switzerland) · 2024Review
- TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments.PLoS computational biology · 2024Article
- Optimization and Performance Analysis of CAT Method for DNA Sequence Similarity Searching and Alignment.Genes · 2024Article
- Anomaly Detection Models for SARS-CoV-2 Surveillance Based on GenomeMicroorganisms · 2023Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The continuous development of sequencing technologies has enabled researchers to obtain large amounts of biological sequence data, and this has resulted in increasing demands for software that can perform sequence alignment fast and accurately. A number of algorithms and tools for sequence alignment have been designed to meet the various needs of biologists. Here, the ideas that prevail in the research of sequence alignment and some quality estimation methods for multiple sequence alignment tools are summarized.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.