Evidence map›Paper›PMID 35451480›Full record

ArticleG3 (Bethesda, Md.)2022

Genetic analysis of daf-18/PTEN missense mutants for starvation resistance and developmental regulation during Caenorhabditis elegans L1 arrest.

Jingxian Chen, Linda Y Tang, Maya E Powell, James M Jordan, L Ryan Baugh

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Developmental and conditional regulation of DAF-2/INSR ubiquitination inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jingxian ChenDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-1642-6060
Linda Y TangDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0003-2865-5378
Maya E PowellDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0003-4859-0567
James M JordanDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-7620-462X
L Ryan BaughDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0003-2148-5492
Duke University · US

Funding

Hormones: Molecular Mechanism of Action and FunctionsT32DK007328 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KOUSTENI, STAVROULA · 1986 to 2025
$7.8M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Regulatory Circuitry and Mechanisms Controlling Cell Fate in C. elegansR35GM131746 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Iva S Greenwald · 2019 to 2026
$5.0M
Systemic, maternal and transgenerational effects of nutrient stressR01GM117408 · NIGMS · DUKE UNIVERSITY · PI BAUGH, LARRY RYAN · 2015 to 2022
$2.5M
Genetic and Genomic Analysis of Starvation Resistance in C. elegansR01GM143159 · NIGMS · DUKE UNIVERSITY · PI BAUGH, LARRY RYAN · 2021 to 2024
$1.2M
Regulation of blast cell quiescence by Pten and TorF32GM140732 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI WITTES, JULIA SARAH · 2021 to 2022
$136k
NIDDK NIH HHS T32 DK007328NIGMS NIH HHS F32 GM140732NIGMS NIH HHS R01 GM117408NIGMS NIH HHS R01 GM143159NIGMS NIH HHS R35 GM131746NIH HHS P40 OD010440
6 · The paper itself

Abstract

Mutations in the well-known tumor suppressor PTEN are observed in many cancers. PTEN is a dual-specificity phosphatase that harbors lipid and protein-phosphatase activities. The Caenorhabditis elegans PTEN ortholog is daf-18, which has pleiotropic effects on dauer formation, aging, starvation resistance, and development. Function of 3 daf-18 point-mutants, G174E, D137A, and C169S, had previously been investigated using high-copy transgenes in a daf-18 null background. These alleles were generated based on their mammalian counterparts and were treated as though they specifically disrupt lipid or protein-phosphatase activity, or both, respectively. Here, we investigated these alleles using genome editing of endogenous daf-18. We assayed 3 traits relevant to L1 starvation resistance, and we show that each point mutant is essentially as starvation-sensitive as a daf-18 null mutant. Furthermore, we show that G174E and D137A do not complement each other, suggesting overlapping effects on lipid and protein-phosphatase activity. We also show that each allele has strong effects on nucleocytoplasmic localization of DAF-16/FoxO and dauer formation, both of which are regulated by PI3K signaling, similar to a daf-18 null allele. In addition, each allele also disrupts M-cell quiescence during L1 starvation, though D137A has a weaker effect than the other alleles, including the null. Our results confirm that daf-18/PTEN is important for promoting starvation resistance and developmental arrest and that it is a potent regulator of PI3K signaling, and they highlight challenges of using genetic analysis to link specific DAF-18/PTEN enzymatic activities to particular phenotypes.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsPTEN PhosphohydrolaseStarvationAnimalsLarvaLipidsMutation, MissensePhosphatidylinositol 3-KinasesCaenorhabditis elegans ProteinsDAF-18 protein, C elegansLipidsPhosphatidylinositol 3-KinasesPTEN PhosphohydrolaseDAF-18L1 arrestL1 diapausePTENquiescencestarvation

Identifiers

PMID35451480
PMCPMC9157142
OpenAlexW4224254608

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.