Evidence map›Paper›PMID 35450486›Full record

ArticleStatistical methods in medical research2022

Unbiased and robust analysis of co-localization in super-resolution images.

Xueyan Liu, Clifford S Guy, Emilio Boada-Romero, Douglas R Green, Margaret E Flanagan, Cheng Cheng, Hui Zhang

Abstract read
In one paragraph

Article in Statistical methods in medical research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. CXCR6 orchestrates brain CD8Nature immunology · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xueyan LiuDepartment of Mathematics, 5784University of New Orleans, New Orleans, LA, USA.
Clifford S GuyDepartment of Immunology, 5417St. Jude Children's Research Hospital, Memphis, TN, USA.
Emilio Boada-RomeroDepartment of Immunology, 5417St. Jude Children's Research Hospital, Memphis, TN, USA.
Douglas R GreenDepartment of Immunology, 5417St. Jude Children's Research Hospital, Memphis, TN, USA.
Margaret E FlanaganDepartment of Pathology, 12244Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Cheng ChengDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Hui ZhangDivision of Biostatistics, Department of Preventive Medicine, 12244Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0001-6825-5649

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Research Education Core FP30AG072977 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Rudolph Castellani · 2021 to 2026
$26.3M
STINGing GBM: A First-in- Man Clinical Trial in Surgical Resectable Recurrent GBMP50CA221747 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Atique U. Ahmed · 2018 to 2026
$21.4M
CPML - Project 3: Genome-wide Studies of Adverse EffectsP50GM115279 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LOH, MIGNON LEE-CHEUN, RELLING, MARY V · 2015 to 2019
$15.1M
nvestigating the role of neuroinflammation in Limbic-predominant age related TDP43 encephalopathyK08AG065463 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FLANAGAN, MARGARET E · 2020 to 2024
$816k
NCI NIH HHS P30 CA021765NCI NIH HHS P30 CA060553NCI NIH HHS P50 CA221747NIA NIH HHS K08 AG065463NIA NIH HHS P30 AG072977NIGMS NIH HHS P50 GM115279
6 · The paper itself

Abstract

Spatial data from high-resolution images abound in many scientific disciplines. For example, single-molecule localization microscopy, such as stochastic optical reconstruction microscopy, provides super-resolution images to help scientists investigate co-localization of proteins and hence their interactions inside cells, which are key events in living cells. However, there are few accurate methods for analyzing co-localization in super-resolution images. The current methods and software are prone to produce false-positive errors and are restricted to only 2-dimensional images. In this paper, we develop a novel statistical method to effectively address the problems of unbiased and robust quantification and comparison of protein co-localization for multiple 2- and 3-dimensional image datasets. This method significantly improves the analysis of protein co-localization using super-resolution image data, as shown by its excellent performance in simulation studies and an analysis of co-localization of protein light chain 3 and lysosomal-associated membrane protein 1 in cell autophagy. Moreover, this method is directly applicable to co-localization analyses in other disciplines, such as diagnostic imaging, epidemiology, environmental science, and ecology.

Indexed as

SoftwareComputer SimulationCo-localizationPearson’s correlationpoint processspatial statisticsstochastic optical reconstruction microscopysuper-resolution images

Identifiers

PMID35450486
PMCPMC9648350

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.