Evidence map›Paper›PMID 35450295›Full record

ArticleFrontiers in cell and developmental biology2022

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Mesenchymal Stem/Stromal Cells Derived from Human Placenta.

Jinlu Li, Quanlei Wang, Yanru An, Xiaoyan Chen, Yanan Xing, Qiuting Deng, Zelong Li, Shengpeng Wang, Xi Dai, Ning Liang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Single-Cell Immunobiology of the Maternal-Fetal Interface.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Jinlu LiCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Quanlei WangBGI-Shenzhen, Shenzhen, China.
Yanru AnBGI-Shenzhen, Shenzhen, China.
Xiaoyan ChenBGI-Shenzhen, Shenzhen, China.
Yanan XingCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Qiuting DengCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Zelong LiCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Shengpeng WangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Xi DaiCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Ning LiangBGI-Shenzhen, Shenzhen, China.
Yong HouBGI-Shenzhen, Shenzhen, China.
Huanming YangBGI-Shenzhen, Shenzhen, China.
Zhouchun ShangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
BGI Group (China) · CNUniversity of Chinese Academy of Sciences · CNJinan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mesenchymal stem/stromal cells derived from placenta (PMSCs) are an attractive source for regenerative medicine because of their multidifferentiation potential and immunomodulatory capabilities. However, the cellular and molecular heterogeneity of PMSCs has not been fully characterized. Here, we applied single-cell RNA sequencing (scRNA-seq) and assay for transposase-accessible chromatin sequencing (scATAC-seq) techniques to cultured PMSCs from human full-term placenta. Based on the inferred characteristics of cell clusters, we identify several distinct subsets of PMSCs with specific characteristics, including immunomodulatory-potential and highly proliferative cell states. Furthermore, integrative analysis of gene expression and chromatin accessibility showed a clearer chromatin accessibility signature than those at the transcriptional level on immunomodulatory-related genes. Cell cycle gene-related heterogeneity can be more easily distinguished at the transcriptional than the chromatin accessibility level in PMSCs. We further reveal putative subset-specific

Indexed as

cell heterogeneityhuman placentaimmunomodulatory-potentialmesenchymal stem cellssingle-cell ATAC-seqsingle-cell RNA-seq

Identifiers

PMID35450295
PMCPMC9017713
OpenAlexW4226203943

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.