Evidence map›Paper›PMID 35449545›Full record

ArticleProceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data2021

A Secure and Reusable Software Architecture for Supporting Online Data Harmonization.

Zlatan Feric, Nicolas Bohm Agostini, Daniel Beene, Antonio J Signes-Pastor, Yuliya Halchenko, Deborah Watkins, Debra MacKenzie, Margaret Karagas, Justin Manjourides, Akram Alshawabkeh and 1 more

Abstract read
In one paragraph

Article in Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zlatan FericDept. of Electrical and Computer Engineering, Northeastern University.
Nicolas Bohm AgostiniDept. of Electrical and Computer Engineering, Northeastern University.
Daniel BeeneCommunity Environmental Health Program, College of Pharmacy, Health Sciences Center, University of New Mexico.
Antonio J Signes-PastorDepartment of Epidemiology, Geisel School of Medicine at Dartmouth.
Yuliya HalchenkoDepartment of Epidemiology, Geisel School of Medicine at Dartmouth.
Deborah WatkinsEnvironmental Health Sciences, School of Public Health, University of Michigan.
Debra MacKenzieCommunity Environmental Health Program, College of Pharmacy, Health Sciences Center, University of New Mexico.
Margaret KaragasDepartment of Epidemiology, Geisel School of Medicine at Dartmouth.
Justin ManjouridesBouvé College of Health Sciences, Northeastern University.
Akram AlshawabkehDept. of Civil and Environmental Engineering, Northeastern University.
David KaeliDept. of Electrical and Computer Engineering, Northeastern University.

Funding

Research Experiences and Training Coordination CoreP42ES017198 · NIEHS · NORTHEASTERN UNIVERSITY · PI HARRIS, SEAN M · 2010 to 2024
$38.6M
Environmental Influences on Child Health Outcomes in Puerto Rico (ECHO-PRO)UH3OD023251 · OD · NORTHEASTERN UNIVERSITY · PI Akram N Alshawabkeh · 2018 to 2026
$24.0M
Understanding Risk Gradients from Environment on Native American Child Health Trajectories: Toxicants, Immunomodulation, Metabolic syndromes, & Metals ExposureUH3OD023344 · OD · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Johnnye L Lewis, Debra MacKenzie · 2019 to 2026
$21.1M
UNM Metals Exposure and Toxicity Assessment on tribal Lands in the Southwest (METALS) Superfund Research ProgramP42ES025589 · NIEHS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI CERRATO, JOSE MANUEL · 2017 to 2025
$16.4M
Project 3: Placental Biomarkers of Exposure and Outcome (Marsit)P01ES022832 · NIEHS · DARTMOUTH COLLEGE · PI MURRAY, CAROLYN J · 2013 to 2018
$4.7M
NIEHS NIH HHS P01 ES022832NIEHS NIH HHS P42 ES017198NIEHS NIH HHS P42 ES025589NIH HHS UH3 OD023251NIH HHS UH3 OD023344
6 · The paper itself

Abstract

Retrospective data harmonization across multiple research cohorts and studies is frequently done to increase statistical power, provide comparison analysis, and create a richer data source for data mining. However, when combining disparate data sources, harmonization projects face data management and analysis challenges. These include differences in the data dictionaries and variable definitions, privacy concerns surrounding health data representing sensitive populations, and lack of properly defined data models. With the availability of mature open-source web-based database technologies, developing a complete software architecture to overcome the challenges associated with the harmonization process can alleviate many roadblocks. By leveraging state-of-the-art software engineering and database principles, we can ensure data quality and enable cross-center online access and collaboration. This paper outlines a complete software architecture developed and customized using the Django web framework, leveraged to harmonize sensitive data collected from three NIH-support birth cohorts. We describe our framework and show how we successfully overcame challenges faced when harmonizing data from these cohorts. We discuss our efforts in data cleaning, data sharing, data transformation, data visualization, and analytics, while reflecting on what we have learned to date from these harmonized datasets.

Identifiers

PMID35449545
PMCPMC9020435

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.