Evidence map›Paper›PMID 35449363›Full record

ArticleVirchows Archiv : an international journal of pathology2022

Detection of perineural invasion in prostate needle biopsies with deep neural networks.

Kimmo Kartasalo, Peter Ström, Pekka Ruusuvuori, Hemamali Samaratunga, Brett Delahunt, Toyonori Tsuzuki, Martin Eklund, Lars Egevad

Abstract read
In one paragraph

Article in Virchows Archiv : an international journal of pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  17. Increased Nerve Density Adversely Affects Outcome in Oral Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kimmo KartasaloDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-9470-4783
Peter StrömDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-1631-806X
Pekka RuusuvuoriInstitute of Biomedicine, University of Turku, Turku, Finland.ORCID https://orcid.org/0000-0001-9086-9591
Hemamali SamaratungaAquesta Uropathology and University of Queensland, QLD, Brisbane, Australia.
Brett DelahuntDepartment of Pathology and Molecular Medicine, Wellington School of Medicine and Health Sciences, University of Otago, Wellington, New Zealand.ORCID https://orcid.org/0000-0002-5398-0300
Toyonori TsuzukiDepartment of Surgical Pathology, School of Medicine, Aichi Medical University, Nagoya, Japan.ORCID https://orcid.org/0000-0002-4855-4366
Martin EklundDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.ORCID https://orcid.org/0000-0001-5032-5266
Lars EgevadDepartment of Oncology and Pathology, Karolinska Institutet, Radiumhemmet P1:02, Karolinska University Hospital, 171 76, Stockholm, Sweden. lars.egevad@ki.se.ORCID http://orcid.org/0000-0001-8531-222X

Funding

Cancerfonden CAN 2017/210Syöpäsäätiö 341967, 334782
6 · The paper itself

Abstract

The presence of perineural invasion (PNI) by carcinoma in prostate biopsies has been shown to be associated with poor prognosis. The assessment and quantification of PNI are, however, labor intensive. To aid pathologists in this task, we developed an artificial intelligence (AI) algorithm based on deep neural networks. We collected, digitized, and pixel-wise annotated the PNI findings in each of the approximately 80,000 biopsy cores from the 7406 men who underwent biopsy in a screening trial between 2012 and 2014. In total, 485 biopsy cores showed PNI. We also digitized more than 10% (n = 8318) of the PNI negative biopsy cores. Digitized biopsies from a random selection of 80% of the men were used to build the AI algorithm, while 20% were used to evaluate its performance. For detecting PNI in prostate biopsy cores, the AI had an estimated area under the receiver operating characteristics curve of 0.98 (95% CI 0.97-0.99) based on 106 PNI positive cores and 1652 PNI negative cores in the independent test set. For a pre-specified operating point, this translates to sensitivity of 0.87 and specificity of 0.97. The corresponding positive and negative predictive values were 0.67 and 0.99, respectively. The concordance of the AI with pathologists, measured by mean pairwise Cohen's kappa (0.74), was comparable to inter-pathologist concordance (0.68 to 0.75). The proposed algorithm detects PNI in prostate biopsies with acceptable performance. This could aid pathologists by reducing the number of biopsies that need to be assessed for PNI and by highlighting regions of diagnostic interest.

Indexed as

ProstateProstatic NeoplasmsArtificial IntelligenceBiopsy, NeedleHumansMaleNeoplasm InvasivenessNeural Networks, ComputerArtificial intelligencePathologyPerineural invasionProstate cancer

Identifiers

PMID35449363
PMCPMC9226086

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.