Evidence map›Paper›PMID 35448973›Full record

ArticleBMC genomics2022

Genome-wide identification and expression analysis of the bZIP transcription factor family genes in response to abiotic stress in Nicotiana tabacum L.

Lili Duan, Zejun Mo, Yue Fan, Kuiyin Li, Mingfang Yang, Dongcheng Li, Yuzhou Ke, Qian Zhang, Feiyan Wang, Yu Fan and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

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  13. Identification and characterization ofFrontiers in plant science · 2024
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  15. Genome-wide identification of bZIP transcription factor family inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
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  16. Systematic evolution ofFrontiers in plant science · 2023
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  18. A Genome-Wide Analysis ofFrontiers in genetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Lili DuanCollege of Agriculture, Guizhou University, Guiyang, 550025, People's Republic of China.
Zejun MoCollege of Agriculture, Guizhou University, Guiyang, 550025, People's Republic of China.
Yue FanCollege of Food Science and Engineering, Xinjiang Institute of Technology, Aksu, 843100, People's Republic of China.
Kuiyin LiCollege of Agriculture, Guizhou University, Guiyang, 550025, People's Republic of China.
Mingfang YangCollege of Agriculture, Guizhou University, Guiyang, 550025, People's Republic of China.
Dongcheng LiGuizhou Key Laboratory for Tobacco Quality Research, Guizhou University, Guiyang, 550025, People's Republic of China.
Yuzhou KeGuizhou Key Laboratory for Tobacco Quality Research, Guizhou University, Guiyang, 550025, People's Republic of China.
Qian ZhangGuizhou Key Laboratory for Tobacco Quality Research, Guizhou University, Guiyang, 550025, People's Republic of China.
Feiyan WangGuizhou Key Laboratory for Tobacco Quality Research, Guizhou University, Guiyang, 550025, People's Republic of China.
Yu FanSchool of Food and Biological Engineering, Chengdu University, Chengdu, 610106, People's Republic of China. fandavi@163.com.
Renxiang LiuGuizhou Key Laboratory for Tobacco Quality Research, Guizhou University, Guiyang, 550025, People's Republic of China. rxliu@gzu.edu.cn.
Guizhou University · CNXinjiang Institute of Engineering · CN

Funding

Guizhou Province High-level Innovative Talents Training Project Hundred Talents Program Qiankehepingtairencai[2016]5663Guizhou Provincial Key Foundation Qiankehejichu[2019]1405National Natural Science Foundation of China 32060510Science and Technology Project of Guizhou Tobacco Company 201904
6 · The paper itself

Abstract

backgroundThe basic leucine zipper (bZIP) transcription factor (TF) is one of the largest families of transcription factors (TFs). It is widely distributed and highly conserved in animals, plants, and microorganisms. Previous studies have shown that the bZIP TF family is involved in plant growth, development, and stress responses. The bZIP family has been studied in many plants; however, there is little research on the bZIP gene family in tobacco.

resultsIn this study, 77 bZIPs were identified in tobacco and named NtbZIP01 through to NtbZIP77. These 77 genes were then divided into eleven subfamilies according to their homology with Arabidopsis thaliana. NtbZIPs were unevenly distributed across twenty-two tobacco chromosomes, and we found sixteen pairs of segmental duplication. We further studied the collinearity between these genes and related genes of six other species. Quantitative real-time polymerase chain reaction analysis identified that expression patterns of bZIPs differed, including in different organs and under various abiotic stresses. NtbZIP49 might be important in the development of flowers and fruits; NtbZIP18 might be an important regulator in abiotic stress.

conclusionsIn this study, the structures and functions of the bZIP family in tobacco were systematically explored. Many bZIPs may play vital roles in the regulation of organ development, growth, and responses to abiotic stresses. This research has great significance for the functional characterisation of the tobacco bZIP family and our understanding of the bZIP family in higher plants.

Indexed as

ArabidopsisBasic-Leucine Zipper Transcription FactorsChromosomes, PlantGene Expression ProfilingGene Expression Regulation, PlantNicotianaPhylogenyPlant ProteinsStress, PhysiologicalBasic-Leucine Zipper Transcription FactorsPlant ProteinsAbiotic stressbZIP familyGene expression patternsNicotiana tabacum L.

Identifiers

PMID35448973
PMCPMC9027840
OpenAlexW4224231322

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.