Evidence map›Paper›PMID 35448635›Full record

ArticleJournal of fungi (Basel, Switzerland)2022

Differential Gene Expression of

Mónika Homa, Sandugash Ibragimova, Csilla Szebenyi, Gábor Nagy, Nóra Zsindely, László Bodai, Csaba Vágvölgyi, Gábor Nagy, Tamás Papp

Open access · goldAbstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

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  12. Special Issue: "Fungi: What Have We Learned from Omics?"Journal of fungi (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mónika HomaDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.
Sandugash IbragimovaDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.
Csilla SzebenyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.
Gábor NagyDepartment of Biochemistry and Molecular Biology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.ORCID 0000-0001-5464-1135
Nóra ZsindelyDepartment of Genetics, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.
László BodaiDepartment of Biochemistry and Molecular Biology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.ORCID 0000-0001-8411-626X
Csaba VágvölgyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.ORCID 0000-0003-0009-7773
Gábor NagyDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.ORCID 0000-0002-7871-6098
Tamás PappDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary.ORCID 0000-0001-8211-5431
University of Szeged · HU

Funding

Hungarian Academy of Sciences 460050Ministry for Innovation and Technology TKP-2021-EGA-28National Research, Development and Innovation Office K131796
6 · The paper itself

Abstract

Mucor lusitanicus and some other members of the fungal order Mucorales display the phenomenon of morphological dimorphism. This means that these fungi aerobically produce filamentous hyphae, developing a coenocytic mycelium, but they grow in a multipolar yeast-like form under anaerobiosis. Revealing the molecular mechanism of the reversible yeast-hyphal transition can be interesting for both the biotechnological application and in the understanding of the pathomechanism of mucormycosis. In the present study, transcriptomic analyses were carried out after cultivating the fungus either aerobically or anaerobically revealing significant changes in gene expression under the two conditions. In total, 539 differentially expressed genes (FDR < 0.05, |log2FC| ≥ 3) were identified, including 190 upregulated and 349 downregulated transcripts. Within the metabolism-related genes, carbohydrate metabolism was proven to be especially affected. Anaerobiosis also affected the transcription of transporters: among the 14 up- and 42 downregulated transporters, several putative sugar transporters were detected. Moreover, a considerable number of transcripts related to amino acid transport and metabolism, lipid transport and metabolism, and energy production and conversion were proven to be downregulated when the culture had been transferred into an anaerobic atmosphere.

Indexed as

anaerobiosisCAZymesdimorphismMucoralestransporteryeast-like growth

Identifiers

PMID35448635
PMCPMC9031258
OpenAlexW4224137443

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.