Evidence map›Paper›PMID 35445848›Full record

ArticleDiscover oncology2022

Global expression profiling of CD10 + /CD19 + pre-B lymphoblasts from Hispanic B-ALL patients correlates with comparative TARGET database analysis.

Laura Castañeda-Partida, Rodolfo Ocadiz-Delgado, José Manuel Sánchez-López, Enrique García-Villa, José Gabriel Peñaloza-González, Martha Margarita Velázquez-Aviña, José Refugio Torres-Nava, Jorge Alfonso Martín-Trejo, Karina Solís-Labastida, Francisco Xavier Guerra-Castillo and 9 more

Open access · goldAbstract read
In one paragraph

Article in Discover oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Plasma methylatedFrontiers in medicine · 2025
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 1 country.

Laura Castañeda-PartidaLaboratorio de Genética Toxicológica, Biología. Facultad de Estudios Profesionales Iztacala (FESI), Universidad Nacional Autónoma de México (UNAM), Tlalnepantla, Estado de México, Mexico.
Rodolfo Ocadiz-DelgadoLaboratorio de Oncología Molecular, Departamento de Genética y Biología Molecular. Centro de Investigación y de Estudios Avanzados (Cinvestav), Ciudad de México, Mexico.
José Manuel Sánchez-LópezLaboratorio de Epigenética, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, Mexico.
Enrique García-VillaLaboratorio de Oncología Molecular, Departamento de Genética y Biología Molecular. Centro de Investigación y de Estudios Avanzados (Cinvestav), Ciudad de México, Mexico.
José Gabriel Peñaloza-GonzálezServicio Oncología Pediátrica, Hospital Juárez de México (HJM), Mexico City, Mexico.
Martha Margarita Velázquez-AviñaServicio Oncología Pediátrica, Hospital Juárez de México (HJM), Mexico City, Mexico.
José Refugio Torres-NavaServicio de Oncología, Hospital Pediátrico Moctezuma (HPM), Mexico City, Mexico.
Jorge Alfonso Martín-TrejoServicio de Hematología, Hospital de Pediatría. Centro Médico Nacional (CMN), "Siglo XXI" , Instituto Mexicano del Seguro Social (IMSS), Mexico City, Mexico.
Karina Solís-LabastidaServicio de Hematología, Hospital de Pediatría. Centro Médico Nacional (CMN), "Siglo XXI" , Instituto Mexicano del Seguro Social (IMSS), Mexico City, Mexico.
Francisco Xavier Guerra-CastilloUnidad de Investigación Médica en Inmunología e Infectología, Hospital de Infectología ''Dr. Daniel Mendez Hernández'', ''La Raza'', IMSS, Mexico City, Mexico.
Vilma Carolina Bekker-MéndezUnidad de Investigación Médica en Inmunología e Infectología, Hospital de Infectología ''Dr. Daniel Mendez Hernández'', ''La Raza'', IMSS, Mexico City, Mexico.
Víctor Hugo Rosales-GarcíaLaboratorio de Citometría de Flujo, Laboratorios Nacionales de Servicios Experimentales, Centro de Investigación y de Estudios Avanzados (Cinvestav), Mexico City, Mexico.
Dámaris Romero-RodríguezUnidad de Citometría, Instituto Nacional de Enfermedades Respiratorias (INER), Mexico City, Mexico.
Raúl Mojica-EspinozaUnidad de Genotipificación y Análisis de Expresión, Instituto Nacional de Medicina Genómica (INMEGEN), Mexico City, Mexico.
Alfonso Mendez-TenorioLaboratorio Biotecnología y Bioinformática Genómica, Departamento de Bioquímica. Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. MX, Mexico City, Mexico.
Crystel A Ramírez-CalzadaLaboratorio Biotecnología y Bioinformática Genómica, Departamento de Bioquímica. Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional. MX, Mexico City, Mexico.
Elízabeth Álvarez-RíosLaboratorio de Oncología Molecular, Departamento de Genética y Biología Molecular. Centro de Investigación y de Estudios Avanzados (Cinvestav), Ciudad de México, Mexico.
Juan Manuel Mejía-AranguréUnidad de Investigación Médica en Epidemiología Clínica, UMAE Hospital de Pediatría. Centro Medico Nacional (CMN) ''Siglo XXI'', Instituto Mexicano del Seguro Social (IMSS), Mexico City, Mexico.
Patricio GariglioLaboratorio de Oncología Molecular, Departamento de Genética y Biología Molecular. Centro de Investigación y de Estudios Avanzados (Cinvestav), Ciudad de México, Mexico. vidal@cinvestav.mx.
Center for Research and Advanced Studies of the National Polytechnic Institute · MXHospital Juárez de México · MXInstituto Politécnico Nacional · MXMexican Social Security Institute · MXNational Institute of Genomic Medicine · MXUniversidad Nacional Autónoma de México · MXHospital Pediátrico Moctezuma · MXInstituto Nacional de Enfermedades Respiratorias · MX

Funding

FONDO DE INVESTIGACIÓN EN SALUD. INSTITUTO MEXICANO DEL SEGURO SOCIAL FIS/IMSS/PROT/G12/1134
6 · The paper itself

Abstract

Mexico City has one of the highest incidences of acute lymphoblastic leukemia (ALL) globally, with patients showing low survival, and high relapse rates. To gain more insight into the molecular features of B-ALL in Mexican children, we isolated CD10 + /CD19 + precursor B lymphoblasts from four bone marrow and nine peripheral blood samples of B-ALL patients using a fluorescence-activated cell sorting protocol. The global gene expression profile (BM vs PB) revealed 136 differentially expressed genes; 62 were upregulated (45.6%) and 74 were downregulated (54.4%). Pearson's correlation coefficient was calculated to determine the similarity between pre-B lymphoblast populations. We selected 26 highly significant genes and validated 21 by RT-qPCR (CNN3, STON2, CALN1, RUNX2, GADD45A, CDC45, CDC20, PLK1, AIDA, HCK, LY86, GPR65, PIK3CG, LILRB2, IL7R, TCL1A, DOCK1, HIST1H3G, PTPN14, CD72, and NT5E). The gene set enrichment analysis of the total expression matrix and the ingenuity pathway analysis of the 136 differentially expressed genes showed that the cell cycle was altered in the bone marrow with four overexpressed genes (PLK1, CDC20, CDC45, and GADD45A) and a low expression of IL7R and PIK3CG, which are involved in B cell differentiation. A comparative bioinformatics analysis of 15 bone marrow and 10 peripheral blood samples from Hispanic B-ALL patients collected by the TARGET program, corroborated the genes observed, except for PIK3CG. We conclude the Mexican and the Hispanic B-ALL patients studied present common driver alterations and histotype-specific mutations that could facilitate risk stratification and diagnostic accuracy and serve as potential therapeutic targets.

Indexed as

ARACNEFACSPediatric precursor B-ALLPIK3CGSMIM10LB2TARGET

Identifiers

PMID35445848
PMCPMC9023642
OpenAlexW4224239946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.