Evidence map›Paper›PMID 35445254›Full record

ArticleStem cells translational medicine2022

Correlation Between Genetic Abnormalities in Induced Pluripotent Stem Cell-Derivatives and Abnormal Tissue Formation in Tumorigenicity Tests.

Takako Yamamoto, Yoji Sato, Satoshi Yasuda, Masayuki Shikamura, Takashi Tamura, Chiemi Takenaka, Naoko Takasu, Masaki Nomura, Hiromi Dohi, Masayo Takahashi and 5 more

Open access · goldAbstract read
In one paragraph

Article in Stem cells translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Development of Animal Models for Preclinical Safety Studies.Advances in experimental medicine and biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Takako YamamotoR&D Center for Cell Therapy, Foundation for Biomedical Research and Innovation, Kobe, Japan.ORCID 0000-0002-1877-0359
Yoji SatoDivision of Cell-Based Therapeutic Products, National Institute of Health Sciences, Kawasaki, Japan.ORCID 0000-0002-9889-1272
Satoshi YasudaDivision of Cell-Based Therapeutic Products, National Institute of Health Sciences, Kawasaki, Japan.
Masayuki ShikamuraR&D Center for Cell Therapy, Foundation for Biomedical Research and Innovation, Kobe, Japan.
Takashi TamuraR&D Center for Cell Therapy, Foundation for Biomedical Research and Innovation, Kobe, Japan.
Chiemi TakenakaR&D Center for Cell Therapy, Foundation for Biomedical Research and Innovation, Kobe, Japan.
Naoko TakasuCiRA Foundation, Kyoto, Japan.
Masaki NomuraCiRA Foundation, Kyoto, Japan.
Hiromi DohiCiRA Foundation, Kyoto, Japan.
Masayo TakahashiRiken BDR, Kobe, Japan.
Michiko MandaiRiken BDR, Kobe, Japan.
Yonehiro KanemuraDepartment of Biomedical Research and Innovation, Institute for Clinical Research, National Hospital Organization Osaka National Hospital, Osaka, Japan.
Masaya NakamuraDepartment of Orthopedic Surgery, Keio University School of Medicine, Tokyo, Japan.
Hideyuki OkanoDepartment of Physiology, Keio University School of Medicine, Tokyo, Japan.
Shin KawamataR&D Center for Cell Therapy, Foundation for Biomedical Research and Innovation, Kobe, Japan.
Foundation for Biomedical Research and Innovation · JPRIKEN Center for Biosystems Dynamics Research · JPKeio University · JPNational Institute of Health Sciences · JPOsaka National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell therapy using induced pluripotent stem cell (iPSC) derivatives may result in abnormal tissue generation because the cells undergo numerous cycles of mitosis before clinical application, potentially increasing the accumulation of genetic abnormalities. Therefore, genetic tests may predict abnormal tissue formation after transplantation. Here, we administered iPSC derivatives with or without single-nucleotide variants (SNVs) and deletions in cancer-related genes with various genomic copy number variant (CNV) profiles into immunodeficient mice and examined the relationships between mutations and abnormal tissue formation after transplantation. No positive correlations were found between the presence of SNVs/deletions and the formation of abnormal tissues; the overall predictivity was 29%. However, a copy number higher than 3 was correlated, with an overall predictivity of 86%. Furthermore, we found CNV hotspots at 14q32.33 and 17q12 loci. Thus, CNV analysis may predict abnormal tissue formation after transplantation of iPSC derivatives and reduce the number of tumorigenicity tests.

Indexed as

Induced Pluripotent Stem CellsAnimalsCarcinogenicity TestsCellular ReprogrammingDNA Copy Number VariationsMiceMutationPolymorphism, Single NucleotideCensus databasecopy number variantsShibata Listsingle-nucleotide variantstumorigenicity testvariation of allele frequencywhole-genome sequencing

Identifiers

PMID35445254
PMCPMC9154342
OpenAlexW4224251838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.