Evidence map›Paper›PMID 35444624›Full record

ArticleFrontiers in microbiology2022

Phylogenetic and Spatiotemporal Analyses of the Complete Genome Sequences of Avian Coronavirus Infectious Bronchitis Virus in China During 1985-2020: Revealing Coexistence of Multiple Transmission Chains and the Origin of LX4-Type Virus.

Wensheng Fan, Jiming Chen, Yu Zhang, Qiaomu Deng, Lanping Wei, Changrun Zhao, Di Lv, Liting Lin, Bingsha Zhang, Tianchao Wei and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Wensheng FanCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Jiming ChenCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Yu ZhangCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Qiaomu DengCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Lanping WeiCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Changrun ZhaoCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Di LvCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Liting LinCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Bingsha ZhangCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Tianchao WeiCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Teng HuangCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Ping WeiCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Meilan MoCollege of Animal Science and Technology, Guangxi University, Nanning, China.
Guangxi University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious bronchitis (IB) virus (IBV) causes considerable economic losses to poultry production. The data on transmission dynamics of IBV in China are limited. The complete genome sequences of 212 IBV isolates in China during 1985-2020 were analyzed as well as the characteristics of the phylogenetic tree, recombination events, dN/dS ratios, temporal dynamics, and phylogeographic relationships. The LX4 type (GI-19) was found to have the highest dN/dS ratios and has been the most dominant genotype since 1999, and the Taiwan-I type (GI-7) and New type (GVI-1) showed an increasing trend. A total of 59 recombinants were identified, multiple recombination events between the field and vaccine strains were found in 24 isolates, and the 4/91-type (GI-13) isolates were found to be more prone to being involved in the recombination. Bayesian phylogeographic analyses indicated that the Chinese IBVs originated from Liaoning province in the early 1900s. The LX4-type viruses were traced back to Liaoning province in the late 1950s and had multiple transmission routes in China and two major transmission routes in the world. Viral phylogeography identified three spread regions for IBVs (including LX4 type) in China: Northeastern China (Heilongjiang, Liaoning, and Jilin), north and central China (Beijing, Hebei, Shanxi, Shandong, and Jiangsu), and Southern China (Guangxi and Guangdong). Shandong has been the epidemiological center of IBVs (including LX4 type) in China. Overall, our study highlighted the reasons why the LX4-type viruses had become the dominant genotype and its origin and transmission routes, providing more targeted strategies for the prevention and control of IB in China.

Indexed as

Bayesian phylogeneticsinfectious bronchitis virusrecombinationselective pressurespatial transmissionviral phylodynamics

Identifiers

PMID35444624
PMCPMC9013971
OpenAlexW4225856086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.