Evidence map›Paper›PMID 35443279›Full record

ArticleCancer discovery2022

SETD2 Haploinsufficiency Enhances Germinal Center-Associated AICDA Somatic Hypermutation to Drive B-cell Lymphomagenesis.

Wilfred Leung, Matt Teater, Ceyda Durmaz, Cem Meydan, Alexandra G Chivu, Amy Chadburn, Edward J Rice, Ashlesha Muley, Jeannie M Camarillo, Jaison Arivalagan and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

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  15. Leukemia & lymphoma · 2024
    Article
  16. The pathobiology of follicular lymphoma.Journal of clinical and experimental hematopathology : JCEH · 2023
    Article
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 4 countries.

Wilfred LeungDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, Cornell University, New York, New York.ORCID 0000-0002-0346-2214
Matt TeaterDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, Cornell University, New York, New York.ORCID 0000-0001-9415-1659
Ceyda DurmazGraduate Program of Physiology, Biophysics and Systems Biology, Weill Cornell Medicine, New York, New York.
Cem MeydanDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-0663-6216
Alexandra G ChivuBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York.ORCID 0000-0001-8875-3530
Amy ChadburnDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-9499-8638
Edward J RiceBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York.
Ashlesha MuleyDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, Cornell University, New York, New York.
Jeannie M CamarilloDepartments of Chemistry, Molecular Biosciences and the National Resource for Translational and Developmental Proteomics, Northwestern University, Evanston, Illinois.ORCID 0000-0001-9699-0931
Jaison ArivalaganDepartments of Chemistry, Molecular Biosciences and the National Resource for Translational and Developmental Proteomics, Northwestern University, Evanston, Illinois.ORCID 0000-0001-8426-5273
Ziyi LiDepartment of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Christopher R FlowersDepartment of Lymphoma and Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Neil L KelleherDepartments of Chemistry, Molecular Biosciences and the National Resource for Translational and Developmental Proteomics, Northwestern University, Evanston, Illinois.ORCID 0000-0002-8815-3372
Charles G DankoBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York.
Marcin ImielinskiDepartment of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-2211-4741
Sandeep S DaveCenter for Genomic and Computational Biology and Department of Medicine, Duke University, Durham, North Carolina.
Scott A ArmstrongDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-9099-4728
Christopher E MasonDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, New York.ORCID 0000-0002-1850-1642
Ari M MelnickDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medicine, Cornell University, New York, New York.ORCID 0000-0002-8074-2287
Cornell University · USNorthwestern University · USPrince Sattam Bin Abdulaziz University · SAThe University of Texas MD Anderson Cancer Center · USDana-Farber Cancer Institute · USDuke University · US

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
The impact of changes in chromatin architecture on cancer phenotypes and tumor progressionP01CA229086 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2019 to 2026
$17.0M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Targeting Epigenetic Circuits in B-Cell LymphomasR35CA220499 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MELNICK, ARI M. · 2018 to 2024
$7.2M
Targeting to Epigenetic Modications in ALLR01CA176745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ARMSTRONG, SCOTT A, QI, JUN · 2012 to 2022
$4.2M
Clinical and Molecular Heterogeneity in the Myelodysplastic SyndromesR01CA249054 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MASON, CHRISTOPHER EDWARD, PARK, CHRISTOPHER Y · 2020 to 2024
$3.5M
Improving Metagenomic Analysis with Novel Algorithms and TechnologiesR35GM138152 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Iman Hajirasouliha · 2020 to 2026
$2.5M
COHESIN REGULATORY PROTEINS AND CHROMOSOMAL ARCHITECTURE IN NORMAL AND MALIGNANT B-CELLSR01CA228528 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI ELEMENTO, OLIVIER, MELNICK, ARI M. · 2018 to 2018
$541k
NCI NIH HHS P01 CA066996NCI NIH HHS P01 CA229086NCI NIH HHS R01 CA176745NCI NIH HHS R01 CA228528NCI NIH HHS R01 CA249054NCI NIH HHS R35 CA220499NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R35 GM138152
6 · The paper itself

Abstract

SETD2 is the sole histone methyltransferase responsible for H3K36me3, with roles in splicing, transcription initiation, and DNA damage response. Homozygous disruption of SETD2 yields a tumor suppressor effect in various cancers. However, SETD2 mutation is typically heterozygous in diffuse large B-cell lymphomas. Here we show that heterozygous Setd2 deficiency results in germinal center (GC) hyperplasia and increased competitive fitness, with reduced DNA damage checkpoint activity and apoptosis, resulting in accelerated lymphomagenesis. Impaired DNA damage sensing in Setd2-haploinsufficient germinal center B (GCB) and lymphoma cells associated with increased AICDA-induced somatic hypermutation, complex structural variants, and increased translocations including those activating MYC. DNA damage was selectively increased on the nontemplate strand, and H3K36me3 loss was associated with greater RNAPII processivity and mutational burden, suggesting that SETD2-mediated H3K36me3 is required for proper sensing of cytosine deamination. Hence, Setd2 haploinsufficiency delineates a novel GCB context-specific oncogenic pathway involving defective epigenetic surveillance of AICDA-mediated effects on transcribed genes. SIGNIFICANCE: Our findings define a B cell-specific oncogenic effect of SETD2 heterozygous mutation, which unleashes AICDA mutagenesis of nontemplate strand DNA in the GC reaction, resulting in lymphomas with heavy mutational burden. GC-derived lymphomas did not tolerate SETD2 homozygous deletion, pointing to a novel context-specific therapeutic vulnerability. This article is highlighted in the In This Issue feature, p. 1599.

Indexed as

B-LymphocytesCytidine DeaminaseGerminal CenterHaploinsufficiencyHistone-Lysine N-MethyltransferaseSomatic Hypermutation, ImmunoglobulinAICDA (Activation-Induced Cytidine Deaminase)HomozygoteHumansSequence DeletionAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseHistone-Lysine N-MethyltransferaseSETD2 protein, human

Identifiers

PMID35443279
PMCPMC9262862
OpenAlexW4224240636

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.