Evidence map›Paper›PMID 35442732›Full record

ArticleScience advances2022

Simultaneous monitoring of disease and microbe dynamics through plasma DNA sequencing in pediatric patients with acute lymphoblastic leukemia.

Valentin Barsan, Yuntao Xia, David Klein, Veronica Gonzalez-Pena, Sarah Youssef, Yuki Inaba, Ousman Mahmud, Sivaraman Natarajan, Vibhu Agarwal, Yakun Pang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Valentin BarsanDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.ORCID 0000-0001-5099-9009
Yuntao XiaDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.
David KleinDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.ORCID 0000-0001-8852-3348
Veronica Gonzalez-PenaDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.
Sarah YoussefDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0001-8681-2680
Yuki InabaDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-0472-8758
Ousman MahmudDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-2499-0857
Sivaraman NatarajanDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-2608-2887
Vibhu AgarwalDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.ORCID 0000-0002-6392-3924
Yakun PangDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.ORCID 0000-0003-2068-2793
Robert AutryDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-6965-2942
Ching-Hon PuiDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-0303-5658
Hiroto InabaDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-0605-7342
William EvansDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Charles GawadDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA 94304, USA.ORCID 0000-0002-4728-8203
St. Jude Children's Research Hospital · USStanford University · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Creating a Catalog of Cancer Clonotype Drug Sensitivities with Single-CellGenome SequencingDP2CA239145 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GAWAD, CHARLES · 2018 to 2018
$2.3M
NCI NIH HHS DP2 CA239145NCI NIH HHS P30 CA021765
6 · The paper itself

Abstract

Treatment of acute lymphoblastic leukemia (ALL) necessitates continuous risk assessment of leukemic disease burden and infections that arise in the setting of immunosuppression. This study was performed to assess the feasibility of a hybrid capture next-generation sequencing panel to longitudinally measure molecular leukemic disease clearance and microbial species abundance in 20 pediatric patients with ALL throughout induction chemotherapy. This proof of concept helps establish a technical and conceptual framework that we anticipate will be expanded and applied to additional patients with leukemia, as well as extended to additional cancer types. Molecular monitoring can help accelerate the attainment of insights into the temporal biology of host-microbe-leukemia interactions, including how those changes correlate with and alter anticancer therapy efficacy. We also anticipate that fewer invasive bone marrow examinations will be required, as these methods improve with standardization and are validated for clinical use.

Indexed as

Precursor Cell Lymphoblastic Leukemia-LymphomaChildHigh-Throughput Nucleotide SequencingHumansSequence Analysis, DNA

Identifiers

PMID35442732
PMCPMC9020671
OpenAlexW4225874504

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.