Evidence map›Paper›PMID 35442082›Full record

ArticleApplied and environmental microbiology2022

Whole-Genome Sequencing and Virulome Analysis of Escherichia coli Isolated from New Zealand Environments of Contrasting Observed Land Use.

Adrian L Cookson, Jonathan C Marshall, Patrick J Biggs, Lynn E Rogers, Rose M Collis, Megan Devane, Rebecca Stott, David A Wilkinson, Janine Kamke, Gale Brightwell

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Shiga toxin-producingFrontiers in microbiology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Draft genome sequences ofMicrobiology resource announcements · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Adrian L CooksonFood Systems Integrity, AgResearchgrid.417738.e Limited, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.ORCID 0000-0002-8197-3386
Jonathan C MarshallmEpiLab, School of Veterinary Science, Massey Universitygrid.148374.d, Palmerston North, New Zealand.
Patrick J BiggsmEpiLab, School of Veterinary Science, Massey Universitygrid.148374.d, Palmerston North, New Zealand.ORCID 0000-0002-0285-4101
Lynn E RogersFood Systems Integrity, AgResearchgrid.417738.e Limited, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.
Rose M CollisFood Systems Integrity, AgResearchgrid.417738.e Limited, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.
Megan DevaneEnvironmental Science and Research Limited, Christchurch, New Zealand.
Rebecca StottNational Institute of Water and Atmospheric Researchgrid.419676.b, Hamilton, New Zealand.
David A WilkinsonmEpiLab, School of Veterinary Science, Massey Universitygrid.148374.d, Palmerston North, New Zealand.ORCID 0000-0002-9986-6212
Janine KamkeHorizons Regional Council, Palmerston North, New Zealand.
Gale BrightwellFood Systems Integrity, AgResearchgrid.417738.e Limited, Hopkirk Research Institute, Massey University, Palmerston North, New Zealand.
AgResearch · NZMassey University · NZEnvironment Canterbury · NZNational Institute of Water and Atmospheric Research · NZNew Zealand Institute for Public Health and Forensic Science · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Generic Escherichia coli is commonly used as an indicator of fecal contamination to assess water quality and human health risk. Where measured E. coli exceedances occur, the presence of other pathogenic microorganisms, such as Shiga toxin-producing E. coli (STEC), is assumed, but confirmatory data are lacking. Putative E. coli isolates (

Indexed as

Escherichia coli InfectionsEscherichia coli ProteinsShiga-Toxigenic Escherichia coliFecesHumansNew ZealandVirulence FactorsEscherichia coli ProteinsVirulence Factorsenvironmentenvironmental microbiologyEscherichiaphylogroupSTECvirulomewhole-genome sequencing

Identifiers

PMID35442082
PMCPMC9088250
OpenAlexW4224240791

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.