Evidence map›Paper›PMID 35441392›Full record

ArticleJournal of clinical laboratory analysis2022

LncRNA PVT1 is increased in renal cell carcinoma and affects viability and migration in vitro.

Julia Bohosova, Marek Kasik, Adela Kubickova, Karolina Trachtova, Michal Stanik, Alexandr Poprach, Ondrej Slaby

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Julia BohosovaCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.
Marek KasikDepartment of Urology, The University Hospital Brno, Faculty of Medicine, Masaryk University, Brno, Czech Republic.
Adela KubickovaDepartment of Pharmacology, Faculty of Medicine, Masaryk University, Brno, Czech Republic.
Karolina TrachtovaCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.
Michal StanikDepartment of Urologic Oncology, Department of Comprehensive Cancer Care, Faculty of Medicine, Masaryk Memorial Cancer Institute, Masaryk University, Brno, Czech Republic.
Alexandr PoprachDepartment of Urologic Oncology, Department of Comprehensive Cancer Care, Faculty of Medicine, Masaryk Memorial Cancer Institute, Masaryk University, Brno, Czech Republic.
Ondrej SlabyCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID https://orcid.org/0000-0002-8450-0584
Masaryk University · CZCentral European Institute of Technology · CZ

Funding

Conceptual Development of Research Organizations 00209805, 65269705European Regional Development Fund-Project BBMRI-CZ LM2018125MEYS CR LM2018132Ministerstvo Zdravotnictví Ceské Republiky NV18-03-00554
6 · The paper itself

Abstract

backgroundRenal cell carcinoma is difficult to diagnose and unpredictable in disease course and severity. There are no specific biomarkers for diagnosis and prognosis estimation feasible in clinical practice. Long non-coding RNAs (lncRNAs) have emerged as potent regulators of gene expression in recent years. Aside from their cellular role, their expression patterns could be used as a biomarker of ongoing pathology.

methodsIn this work, we used next-generation sequencing for global lncRNA expression profiling in tumor and non-tumor tissue of RCC patients. The four candidate lncRNAs have been further validated on an independent cohort. PVT1, as the most promising lncRNA, has also been studied using functional in vitro tests.

resultsNext-generation sequencing showed significant dysregulation of 1163 lncRNAs; among them top 20 dysregulated lncRNAs were AC061975.7, AC124017.1, AP000696.1, AC148477.4, LINC02437, GATA3-AS, LINC01762, LINC01230, LINC01271, LINC01187, LINC00472, AC007849.1, LINC00982, LINC01543, AL031710.1, and AC019197.1 as down-regulated lncRNAs; and SLC16A1-AS1, PVT1, LINC0887, and LUCAT1 as up-regulated lncRNAs. We observed statistically significant dysregulation of PVT1, LUCAT1, and LINC00982. Moreover, we studied the effect of artificial PVT1 decrease in renal cell line 786-0 and observed an effect on cell viability and migration.

conclusionOur results show not only the diagnostic but also the therapeutic potential of PVT1 in renal cell carcinoma.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsRNA, Long NoncodingBiomarkers, TumorCell Line, TumorCell MovementCell ProliferationCell SurvivalGene Expression Regulation, NeoplasticHigh-Throughput Nucleotide SequencingHumansBiomarkers, Tumorlong non-coding RNA LUCAT1, humanPVT1 long-non-coding RNA, humanRNA, Long Noncodingdiagnosislong non-coding RNAmigration next-generation sequencingproliferationtranscriptome

Identifiers

PMID35441392
PMCPMC9169165
OpenAlexW4224285105

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.