Evidence map›Paper›PMID 35440129›Full record

ArticleNature communications2022

Multilayered regulations of alternative splicing, NMD, and protein stability control temporal induction and tissue-specific expression of TRIM46 during axon formation.

John K Vuong, Volkan Ergin, Liang Chen, Sika Zheng

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. The Role of mRNA Alternative Processing in Mammalian Neurodevelopment.International journal of molecular sciences · 2025
    Review
  4. The Implications of Alternative Splicing Regulation for Maximum Lifespan.bioRxiv : the preprint server for biology · 2025
    Article
  5. Evaluating TRIM46's Role in Axon Initial Segment Formation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  6. TRIM46 Is Required for Microtubule Fasciculation In Vivo But Not Axon Specification or Axon Initial Segment Formation.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  7. Review
  8. Translatome analysis in acute ischemic stroke: Astrocytes and microglia exhibit differences in poststroke alternative splicing of expressed transcripts.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  9. Review
  10. Article
  11. TheThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  12. Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

John K VuongDivision of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, 92521, USA.
Volkan ErginDivision of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, 92521, USA.
Liang ChenDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, 90089, USA.
Sika ZhengDivision of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, 92521, USA. sika.zheng@ucr.edu.ORCID 0000-0002-0573-4981
University of California, Riverside · USUniversity of Southern California · US

Funding

RNA regulation of intrinsically-determined neuronal propertiesR01MH116220 · NIMH · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHENG, SIKA · 2018 to 2022
$2.4M
The Regulation and Function of Neuron-Specific Alternative SplicingR01NS104041 · NINDS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI ZHENG, SIKA · 2018 to 2022
$2.1M
Understanding the NMD regulatory path from genetic variation to phenotypesR01GM137428 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, LIANG · 2020 to 2023
$1.6M
NIGMS NIH HHS R01 GM137428NIMH NIH HHS R01 MH116220NINDS NIH HHS R01 NS104041
6 · The paper itself

Abstract

The gene regulation underlying axon formation and its exclusiveness to neurons remains elusive. TRIM46 is postulated to determine axonal fate. We show Trim46 mRNA is expressed before axonogenesis, but TRIM46 protein level is inhibited by alternative splicing of two cassette exons coupled separately to stability controls of Trim46 mRNA and proteins, effectively inducing functional knockout of TRIM46 proteins. Exon 8 inclusion causes nonsense-mediated mRNA decay of Trim46 transcripts. PTBP2-mediated exon 10 skipping produces transcripts encoding unstable TRIM46 proteins. During axonogenesis, transcriptional activation, decreased exon 8 inclusion, and enhanced exon 10 inclusion converge to increase TRIM46 proteins, leading to its neural-specific expression. Genetic deletion of these exons alters TRIM46 protein levels and shows TRIM46 is instructive though not always required for AnkG localization nor a determinant of AnkG density. Therefore, two concurrently but independently regulated alternative exons orchestrate the temporal induction and tissue-specific expression of TRIM46 proteins to mediate axon formation.

Indexed as

Alternative SplicingNonsense Mediated mRNA DecayAxonsProtein StabilityRNA, MessengerRNA, Messenger

Identifiers

PMID35440129
PMCPMC9019110
OpenAlexW4224213055

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.