Evidence map›Paper›PMID 35439174›Full record

ArticleJCI insight2022

Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection.

Rachel M Gittelman, Enrico Lavezzo, Thomas M Snyder, H Jabran Zahid, Cara L Carty, Rebecca Elyanow, Sudeb Dalai, Ilan Kirsch, Lance Baldo, Laura Manuto and 19 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 66 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 6 institutions in 3 countries.

Rachel M GittelmanAdaptive Biotechnologies, Seattle, Washington, USA.
Enrico LavezzoDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Thomas M SnyderAdaptive Biotechnologies, Seattle, Washington, USA.
H Jabran ZahidMicrosoft Research, Redmond, Washington, USA.
Cara L CartyAdaptive Biotechnologies, Seattle, Washington, USA.
Rebecca ElyanowAdaptive Biotechnologies, Seattle, Washington, USA.
Sudeb DalaiAdaptive Biotechnologies, Seattle, Washington, USA.
Ilan KirschAdaptive Biotechnologies, Seattle, Washington, USA.
Lance BaldoAdaptive Biotechnologies, Seattle, Washington, USA.
Laura ManutoDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Elisa FranchinDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Claudia Del VecchioDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Monia PacentiAzienda Ospedale Padova, Microbiology and Virology Unit, Padua, Italy.
Caterina BoldrinAzienda Ospedale Padova, Microbiology and Virology Unit, Padua, Italy.
Margherita CattaiAzienda Ospedale Padova, Microbiology and Virology Unit, Padua, Italy.
Francesca SaluzzoDivision of Immunology, Transplantation and Infectious Disease, IRCCS Ospedale San Raffaele, Milan, Italy.
Andrea PadoanDepartment of Medicine, University of Padova, Padua, Italy.
Mario PlebaniDepartment of Medicine, University of Padova, Padua, Italy.
Fabio SimeoniCenter for Omics Sciences and.
Jessica BordiniDivision of Experimental Oncology, IRCCS Ospedale San Raffaele, Milan, Italy.
Nicola I LorèDivision of Immunology, Transplantation and Infectious Disease, IRCCS Ospedale San Raffaele, Milan, Italy.
Dejan LazarevićCenter for Omics Sciences and.
Daniela M CirilloDivision of Immunology, Transplantation and Infectious Disease, IRCCS Ospedale San Raffaele, Milan, Italy.
Paolo GhiaDivision of Experimental Oncology, IRCCS Ospedale San Raffaele, Milan, Italy.
Stefano ToppoDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Jonathan M CarlsonMicrosoft Research, Redmond, Washington, USA.
Harlan S RobinsAdaptive Biotechnologies, Seattle, Washington, USA.
Andrea CrisantiDepartment of Molecular Medicine, University of Padova, Padua, Italy.
Giovanni TononCenter for Omics Sciences and.
Adaptive Biotechnologies (United States) · USUniversity of Padua · ITIRCCS Ospedale San Raffaele · ITAzienda Ospedale - Università Padova · ITMicrosoft (United States) · USVita-Salute San Raffaele University · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T cells play a prominent role in orchestrating the immune response to viral diseases, but their role in the clinical presentation and subsequent immunity to SARS-CoV-2 infection remains poorly understood. As part of a population-based survey of the municipality of Vo', Italy, conducted after the initial SARS-CoV-2 outbreak, we sampled the T cell receptor (TCR) repertoires of the population 2 months after the initial PCR survey and followed up positive cases 9 and 15 months later. At 2 months, we found that 97.0% (98 of 101) of cases had elevated levels of TCRs associated with SARS-CoV-2. T cell frequency (depth) was increased in individuals with more severe disease. Both depth and diversity (breadth) of the TCR repertoire were positively associated with neutralizing antibody titers, driven mostly by CD4+ T cells directed against spike protein. At the later time points, detection of these TCRs remained high, with 90.7% (78 of 96) and 86.2% (25 of 29) of individuals having detectable signal at 9 and 15 months, respectively. Forty-three individuals were vaccinated by month 15 and showed a significant increase in TCRs directed against spike protein. Taken together, these results demonstrate the central role of T cells in mounting an immune defense against SARS-CoV-2 that persists out to 15 months.

Indexed as

COVID-19CD4-Positive T-LymphocytesHumansReceptors, Antigen, T-CellSARS-CoV-2Spike Glycoprotein, CoronavirusReceptors, Antigen, T-CellSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2COVID-19ImmunologyT cells

Identifiers

PMID35439174
PMCPMC9220833
OpenAlexW4224232618

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.