Evidence map›Paper›PMID 35437807›Full record

ArticleThe EMBO journal2022

The intrinsically disordered CARDs-Helicase linker in RIG-I is a molecular gate for RNA proofreading.

Brandon D Schweibenz, Swapnil C Devarkar, Mihai Solotchi, Candice Craig, Jie Zheng, Bruce D Pascal, Samantha Gokhale, Ping Xie, Patrick R Griffin, Smita S Patel

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Brandon D SchweibenzDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0003-1532-4502
Swapnil C DevarkarDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0002-9271-243X
Mihai SolotchiDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0003-3924-1154
Candice CraigDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0003-0248-2149
Jie ZhengDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Bruce D PascalDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Samantha GokhaleDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0003-0554-099X
Ping XieDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0002-7338-3730
Patrick R GriffinDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL, USA.
Smita S PatelDepartment of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0002-2523-4933
Rutgers, The State University of New Jersey · USScripps Research Institute · US

Funding

Mechanistic studies of nucleic acid enzymes involved in DNA replication, transcription, and innate immunity.R35GM118086 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI SMITA S PATEL · 2016 to 2026
$8.9M
Roles of TRAF3 in myeloid derived suppressor cells in chronic inflammationR21AI128264 · NIAID · RUTGERS, THE STATE UNIV OF N.J. · PI XIE, PING · 2017 to 2018
$388k
NIAID NIH HHS R21 AI128264NIGMS NIH HHS R35 GM118086
6 · The paper itself

Abstract

The innate immune receptor RIG-I provides a first line of defense against viral infections. Viral RNAs are recognized by RIG-I's C-terminal domain (CTD), but the RNA must engage the helicase domain to release the signaling CARD (Caspase Activation and Recruitment Domain) domains from their autoinhibitory CARD2:Hel2i interactions. Because the helicase itself lacks RNA specificity, mechanisms to proofread RNAs entering the helicase domain must exist. Although such mechanisms would be crucial in preventing aberrant immune responses by non-specific RNAs, they remain largely uncharacterized to date. This study reveals a previously unknown proofreading mechanism through which RIG-I ensures that the helicase engages RNAs explicitly recognized by the CTD. A crucial part of this mechanism involves the intrinsically disordered CARDs-Helicase Linker (CHL), which connects the CARDs to the helicase subdomain Hel1. CHL uses its negatively charged regions to antagonize incoming RNAs electrostatically. In addition to this RNA gating function, CHL is essential for stabilization of the CARD2:Hel2i interface. Overall, we uncover that the CHL and CARD2:Hel2i interface work together to establish a tunable gating mechanism that allows CTD-chosen RNAs to bind the helicase domain, while at the same time blocking non-specific RNAs. These findings also indicate that CHL could represent a novel target for RIG-I-based therapeutics.

Indexed as

DEAD-box RNA HelicasesRNA, Double-StrandedDEAD Box Protein 58DNA HelicasesImmunity, InnateProtein Structure, TertiaryRNA, ViralDEAD Box Protein 58DEAD-box RNA HelicasesDNA HelicasesRNA, Double-StrandedRNA, Viralintrinsically disordered linkerregulatory regionRIG-IRNA discriminationself-vs-non-self

Identifiers

PMID35437807
PMCPMC9108607
OpenAlexW4224228187

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.