Evidence map›Paper›PMID 35435315›Full record

ArticleTransboundary and emerging diseases2022

Identification of diffusion routes of O/EA-3 topotype of foot-and-mouth disease virus in Africa and Western Asia between 1974 and 2019 - a phylogeographic analysis.

Laëtitia Canini, Sandra Blaise-Boisseau, Antonello Di Nardo, Andrew E Shaw, Aurore Romey, Anthony Relmy, Cindy Bernelin-Cottet, Anne-Laure Salomez, Andy Haegeman, Hussaini Ularamu and 21 more

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Laëtitia CaniniParis Est University, ANSES, Laboratory for Animal Health, Epidemiology Unit, Maisons-Alfort, France.
Sandra Blaise-BoisseauUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.ORCID https://orcid.org/0000-0002-8812-2023
Antonello Di NardoThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 ONF, UK.
Andrew E ShawThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 ONF, UK.
Aurore RomeyUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.
Anthony RelmyUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.
Cindy Bernelin-CottetUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.
Anne-Laure SalomezUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.
Andy HaegemanSciensano, Scientific Direction of Infectious Diseases in Animals, Service for Exotic Viruses and Particular Diseases, Groeselenberg 99, Brussels, Belgium.
Hussaini UlaramuVirology Division, National Veterinary Research Institute, Vom, Nigeria.ORCID https://orcid.org/0000-0003-0361-7885
Hafsa MadaniLaboratoire Central Vétérinaire d'Alger, Institut National de Médecine Vétérinaire (INMV), Mohammadia, Algeria.
Bruno Lalidia OuobaLaboratoire national d'élevage of Ouagadougou, Burkina Faso.
Habibata Lamouni ZerboLaboratoire national d'élevage of Ouagadougou, Burkina Faso.
Mamadou Lamarana SouareCentral Veterinary Diagnostic Laboratory in Conakry, Guinea.
Cyprien Yapi BokeLaboratoire central vétérinaire de Bingerville (LCVB), Côte d'Ivoire.
Ibrahim EldaghayesFaculty of Veterinary Medicine, University of Tripoli, Libya.
Abdunaser DayhumFaculty of Veterinary Medicine, University of Tripoli, Libya.
Moina Hasni EbouCentre national d'élevage et de recherches vétérinaires, Nouakchott, Mauritanie.
Nabil AbouchoaibOffice National de Sécurité Sanitaire des produits Alimentaires (ONSSA), Rabat, Morocco.
Soufien SghaierInstitute of Veterinary Research of Tunisia, Tunis, Tunisia.
David LefebvreSciensano, Scientific Direction of Infectious Diseases in Animals, Service for Exotic Viruses and Particular Diseases, Groeselenberg 99, Brussels, Belgium.
Kris DeClercqSciensano, Scientific Direction of Infectious Diseases in Animals, Service for Exotic Viruses and Particular Diseases, Groeselenberg 99, Brussels, Belgium.
Valerie MilouetThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 ONF, UK.
Emiliana BrocchiIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna, Brescia, Italy.ORCID https://orcid.org/0000-0003-1864-080X
Giulia PezzoniIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna, Brescia, Italy.ORCID https://orcid.org/0000-0002-6718-5658
Charles NfonNational Center for Foreign Animal Disease, Canadian Food Inspection Agency, Winnipeg, MB, Canada.ORCID https://orcid.org/0000-0003-0899-3986
Donald KingThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 ONF, UK.
Benoit DurandParis Est University, ANSES, Laboratory for Animal Health, Epidemiology Unit, Maisons-Alfort, France.
Nick KnowlesThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 ONF, UK.ORCID https://orcid.org/0000-0002-6696-1344
Labib Bakkali- KassimiUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.
Souheyla BenfridUMR 1161 Virology, INRA, ENVA, ANSES, Laboratory for Animal Health; EURL for Foot-and-mouth disease, Maisons-Alfort, France.ORCID https://orcid.org/0000-0001-5665-9291

Funding

Department for Environment, Food and Rural Affairs, UK GovernmentEuropean Commission
6 · The paper itself

Abstract

Foot-and-mouth disease (FMD) affects the livestock industry and socioeconomic sustainability of many African countries. The success of FMD control programs in Africa depends largely on understanding the dynamics of FMD virus (FMDV) spread. In light of the recent outbreaks of FMD that affected the North-Western African countries in 2018 and 2019, we investigated the evolutionary phylodynamics of the causative serotype O viral strains all belonging to the East-Africa 3 topotype (O/EA-3). We analyzed a total of 489 sequences encoding the FMDV VP1 genome region generated from samples collected from 25 African and Western Asian countries between 1974 and 2019. Using Bayesian evolutionary models on genomic and epidemiological data, we inferred the routes of introduction and migration of the FMDV O/EA-3 topotype at the inter-regional scale. We inferred a mean substitution rate of 6.64 × 10

Indexed as

Foot-and-Mouth DiseaseFoot-and-Mouth Disease VirusAnimalsBayes TheoremCattleDisease OutbreaksNigeriaPhylogenySerogroupAfricafoot-and-mouth diseaseMiddle-Eastphylogeographyserotype Otopotype East Africa-3transboundaryviral migration

Identifiers

PMID35435315
PMCPMC9795992

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.