Evidence map›Paper›PMID 35434785›Full record

ArticleFEBS letters2022

Clinically observed deletions in SARS-CoV-2 Nsp1 affect its stability and ability to inhibit translation.

Pravin Kumar, Erin Schexnaydre, Karim Rafie, Tatsuaki Kurata, Ilya Terenin, Vasili Hauryliuk, Lars-Anders Carlson

Open access · hybridAbstract read
In one paragraph

Article in FEBS letters, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Functional Activity of Isoform 2 of Human eRF1.International journal of molecular sciences · 2024
    Article
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  4. Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Pravin KumarDepartment of Medical Biochemistry and Biophysics, Umeå University, Sweden.
Erin SchexnaydreDepartment of Medical Biochemistry and Biophysics, Umeå University, Sweden.
Karim RafieDepartment of Medical Biochemistry and Biophysics, Umeå University, Sweden.
Tatsuaki KurataDepartment of Experimental Medicine, University of Lund, Sweden.
Ilya TereninBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Russia.
Vasili HauryliukDepartment of Experimental Medicine, University of Lund, Sweden.ORCID 0000-0003-2389-5057
Lars-Anders CarlsonDepartment of Medical Biochemistry and Biophysics, Umeå University, Sweden.ORCID 0000-0003-2342-6488
Umeå University · SELund University · SELomonosov Moscow State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonstructural protein 1 (Nsp1) of SARS-CoV-2 inhibits host cell translation through an interaction between its C-terminal domain and the 40S ribosome. The N-terminal domain (NTD) of Nsp1 is a target of recurring deletions, some of which are associated with altered COVID-19 disease progression. Here, we characterize the efficiency of translational inhibition by clinically observed Nsp1 deletion variants. We show that a frequent deletion of residues 79-89 severely reduces the ability of Nsp1 to inhibit translation while not abrogating Nsp1 binding to the 40S. Notably, while the SARS-CoV-2 5' untranslated region enhances translation of mRNA, it does not protect from Nsp1-mediated inhibition. Finally, thermal stability measurements and structure predictions reveal a correlation between stability of the NTD and the efficiency of translation inhibition.

Indexed as

COVID-19SARS-CoV-2HumansProtein BiosynthesisRibosomesViral Nonstructural ProteinsViral Nonstructural ProteinsCOVID-19Nsp1pathogenicityribosomeSARS-CoV-2virus

Identifiers

PMID35434785
PMCPMC9081967
OpenAlexW4224126479

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.