Evidence map›Paper›PMID 35434776›Full record

ArticleAmino acids2022

Meta-proteomic analysis of two mammoth's trunks by EVA technology and high-resolution mass spectrometry for an indirect picture of their habitat and the characterization of the collagen type I, alpha-1 and alpha-2 sequence.

Annamaria Cucina, Antonella Di Francesco, Rosaria Saletti, Maria Gaetana Giovanna Pittalà, Gleb Zilberstein, Svetlana Zilberstein, Alexei Tikhonov, Andrey G Bublichenko, Pier Giorgio Righetti, Salvatore Foti and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Amino acids, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Preservation of proteins in the geosphere.Nature ecology & evolution · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Annamaria CucinaLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy.
Antonella Di FrancescoLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy.
Rosaria SalettiLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy.
Maria Gaetana Giovanna PittalàLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy.
Gleb ZilbersteinSpectrophon Ltd, Oppenheimer 7, 7670107, Rehovot, Israel.
Svetlana ZilbersteinSpectrophon Ltd, Oppenheimer 7, 7670107, Rehovot, Israel.
Alexei TikhonovZoological Institute, Russian Academy of Sciences, Universitetskaya nab.1, Saint-Petersburg, 199034, Russia.
Andrey G BublichenkoZoological Institute, Russian Academy of Sciences, Universitetskaya nab.1, Saint-Petersburg, 199034, Russia.
Pier Giorgio RighettiDepartment of Chemistry, Materials and Chemical Engineering ''Giulio Natta'', Politecnico di Milano, Via Mancinelli 7, 20131, Milano, Italy.
Salvatore FotiLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy.
Vincenzo CunsoloLaboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy. vcunsolo@unict.it.ORCID http://orcid.org/0000-0002-2349-5494
University of Catania · ITZoological Institute · RUPolitecnico di Milano · IT

Funding

Università di Catania grant number ARVESTUniversità di Catania Linea PIACERI
6 · The paper itself

Abstract

The recent paleoproteomic studies, including paleo-metaproteomic analyses, improved our understanding of the dietary of ancient populations, the characterization of past human diseases, the reconstruction of the habitat of ancient species, but also provided new insights into the phylogenetic relationships between extant and extinct species. In this respect, the present work reports the results of the metaproteomic analysis performed on the middle part of a trunk, and on the portion of a trunk tip tissue of two different woolly mammoths some 30,000 years old. In particular, proteins were extracted by applying EVA (Ethylene-Vinyl Acetate studded with hydrophilic and hydrophobic resins) films to the surface of these tissues belonging to two Mammuthus primigenus specimens, discovered in two regions located in the Russian Far East, and then investigated via a shotgun MS-based approach. This approach allowed to obtain two interesting results: (i) an indirect description of the habitat of these two mammoths, and (ii) an improved characterization of the collagen type I, alpha-1 and alpha-2 chains (col1a1 and col1a2). Sequence characterization of the col1a1 and col1a2 highlighted some differences between M. primigenius and other Proboscidea together with the identification of three (two for col1a1, and one for col1a2) potentially diagnostic amino acidic mutations that could be used to reliably distinguish the Mammuthus primigenius with respect to the other two genera of elephantids (i.e., Elephas and Loxodonta), and the extinct American mastodon (i.e., Mammut americanum). The results were validated through the level of deamidation and other diagenetic chemical modifications of the sample peptides, which were used to discriminate the "original" endogenous peptides from contaminant ones. The data have been deposited to the ProteomeXchange with identifier < PXD029558 > .

Indexed as

MammothsAnimalsCollagen Type IEcosystemFossilsHumansInfant, NewbornMass SpectrometryPhylogenyProteomicsTechnologyCollagen Type IChemical modificationsCollagen type I, alpha-1 and alpha-2 sequenceDeamidationMammothMeta-paleoproteomicsOrbitrap fusion tribrid high-resolution mass spectrometerShotgun proteomics

Identifiers

PMID35434776
PMCPMC9213349
OpenAlexW4223909010

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.