Evidence map›Paper›PMID 35430871›Full record

ArticlemSystems2022

Multiplexed Strain Phenotyping Defines Consequences of Genetic Diversity in Mycobacterium tuberculosis for Infection and Vaccination Outcomes.

Allison F Carey, Xin Wang, Nico Cicchetti, Caitlin N Spaulding, Qingyun Liu, Forrest Hopkins, Jessica Brown, Jaimie Sixsmith, Rujapak Sutiwisesak, Samuel M Behar and 2 more

Abstract read
In one paragraph

Article in mSystems, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. HowVaccines · 2026
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Microbiological aspects and clinical impact of lower lung field tuberculosis: An observational cohort study in Peru.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2025
    Observational
  7. Clinical Strains ofPathogens (Basel, Switzerland) · 2024
    Article
  8. The chosen few:Frontiers in immunology · 2024
    Review
  9. Article
  10. Review
  11. Drug-resistant strains ofFrontiers in cellular and infection microbiology · 2023
    Review
  12. The evolving biology ofFrontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Allison F CareyDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.ORCID 0000-0003-0937-4976
Xin WangDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Nico CicchettiDivision of Microbiology & Immunology, Department of Pathology, University of Utah, Salt Lake City, Utah, USA.
Caitlin N SpauldingDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Qingyun LiuDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Forrest HopkinsDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Jessica BrownDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Jaimie SixsmithDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Rujapak SutiwisesakImmunology and Microbiology Program, Graduate School of Biomedical Science, University of Massachusetts Medical Schoolgrid.168645.8, Worcester, Massachusetts, USA.
Samuel M BeharImmunology and Microbiology Program, Graduate School of Biomedical Science, University of Massachusetts Medical Schoolgrid.168645.8, Worcester, Massachusetts, USA.ORCID 0000-0002-3374-6699
Thomas R IoergerDepartment of Computer Science, Texas A&M University, College Station, Texas, USA.
Sarah M FortuneDepartment of Immunology & Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.ORCID 0000-0001-7565-9975

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
Systems Genetics of TuberculosisP01AI132130 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SASSETTI, CHRISTOPHER M · 2017 to 2021
$11.2M
MOLECULAR IMMUNOLOGY AND TUMOR BIOLOGYT32CA009216 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Michael Langenau · 1985 to 2026
$10.6M
Regulation of CD8+ T cell immunity to tuberculosis (pending title)R01AI106725 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BEHAR, SAMUEL M · 2013 to 2022
$6.1M
Mycobacterial determinants of escape from pathogen-specific immunityK08AI139339 · NIAID · UNIVERSITY OF UTAH · PI CAREY, ALLISON · 2018 to 2022
$1.0M
NCI NIH HHS T32 CA009216NIAID NIH HHS K08 AI139339NIAID NIH HHS P01 AI132130NIAID NIH HHS R01 AI106725NIAID NIH HHS T32 AI007061
6 · The paper itself

Abstract

There is growing evidence that genetic diversity in Mycobacterium tuberculosis, the causative agent of tuberculosis, contributes to the outcomes of infection and public health interventions, such as vaccination. Epidemiological studies suggest that among the phylogeographic lineages of M. tuberculosis, strains belonging to a sublineage of Lineage 2 (mL2) are associated with concerning clinical features, including hypervirulence, treatment failure, and vaccine escape. The global expansion and increasing prevalence of this sublineage has been attributed to the selective advantage conferred by these characteristics, yet confounding host and environmental factors make it difficult to identify the bacterial determinants driving these associations in human studies. Here, we developed a molecular barcoding strategy to facilitate high-throughput, experimental phenotyping of M. tuberculosis clinical isolates. This approach allowed us to characterize growth dynamics for a panel of genetically diverse M. tuberculosis strains during infection and after vaccination in the mouse model. We found that mL2 strains exhibit distinct growth dynamics

Indexed as

Mycobacterium tuberculosisTuberculosisAnimalsBCG VaccineGenetic VariationHumansMiceVaccinationBCG VaccineBCGclinical strainsgenomicsmycobacteriumTnSeqtuberculosisvaccination

Identifiers

PMID35430871
PMCPMC9239107

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.