Evidence map›Paper›PMID 35430812›Full record

ArticleBiochemistry2022

Residual Structure in the Denatured State of the Fast-Folding UBA(1) Domain from the Human DNA Excision Repair Protein HHR23A.

Dustin C Becht, Moses J Leavens, Baisen Zeng, Michael T Rothfuss, Klára Briknarová, Bruce E Bowler

Abstract read
In one paragraph

Article in Biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. AlphaFold2-RAVE: From Sequence to Boltzmann Ranking.Journal of chemical theory and computation · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dustin C BechtDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.
Moses J LeavensDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.
Baisen ZengDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.
Michael T RothfussDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.
Klára BriknarováDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.ORCID 0000-0003-3737-9803
Bruce E BowlerDepartment of Chemistry & Biochemistry, University of Montana, Missoula, Montana 59812, United States.ORCID 0000-0003-1543-2466

Funding

Research Core (Developmental Research Project Program)P20GM103474 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Jeffrey Good · 2012 to 2026
$60.0M
Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
NIGMS NIH HHS P20 GM103474NIGMS NIH HHS P20 GM103546
6 · The paper itself

Abstract

The structure of the first ubiquitin-associated domain from HHR23A, UBA(1), was determined by X-ray crystallography at a 1.60 Å resolution, and its stability, folding kinetics, and residual structure under denaturing conditions have been investigated. The concentration dependence of thermal denaturation and size-exclusion chromatography indicate that UBA(1) is monomeric. Guanidine hydrochloride (GdnHCl) denaturation experiments reveal that the unfolding free energy, Δ

Indexed as

DNA RepairProtein FoldingCircular DichroismDNAGuanidineHumansKineticsProtein DenaturationThermodynamicsDNAGuanidine

Identifiers

PMID35430812
PMCPMC9150713

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.