Evidence map›Paper›PMID 35429227›Full record

ArticleMolecular ecology resources2022

An ancient truncated duplication of the anti-Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family.

Ming Wen, Qiaowei Pan, Elodie Jouanno, Jerome Montfort, Margot Zahm, Cédric Cabau, Christophe Klopp, Carole Iampietro, Céline Roques, Olivier Bouchez and 21 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular ecology resources, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 36 citations in OpenAlex.

  1. Molecular Characterization and Functional Analysis ofInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 13 institutions in 8 countries.

Ming WenState Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Changsha, China.
Qiaowei PanINRAE, LPGP, Rennes, France.ORCID 0000-0002-8501-0405
Elodie JouannoINRAE, LPGP, Rennes, France.
Jerome MontfortINRAE, LPGP, Rennes, France.
Margot ZahmPlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRAE, Castanet Tolosan, France.ORCID 0000-0001-8632-0109
Cédric CabauSIGENAE, GenPhySE, Université de Toulouse, INRAE, ENVT, Castanet Tolosan, France.ORCID 0000-0001-8560-4003
Christophe KloppPlate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRAE, Castanet Tolosan, France.ORCID 0000-0001-7126-5477
Carole IampietroINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID 0000-0002-8148-4785
Céline RoquesINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Olivier BouchezINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Adrien CastinelINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Cécile DonnadieuINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.ORCID 0000-0002-5164-3095
Hugues ParrinelloMontpellier GenomiX (MGX), C/O Institut de Génomique Fonctionnelle, Montpellier, France.ORCID 0000-0002-1151-001X
Charles PoncetGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Elodie BelmonteGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Véronique GautierGDEC Gentyane, INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Jean-Christophe AvarreISEM, CNRS, IRD, Univ Montpellier, Montpellier, France.ORCID 0000-0001-6899-7052
Remi DugueISEM, CNRS, IRD, Univ Montpellier, Montpellier, France.
Rudhy GustianoResearch Institute of Freshwater Fisheries (CRIFI-RIFF), Instalasi Penelitian Perikanan Air Tawar, Jakarta, Indonesia.
Trần Thị Thúy HàResearch Institute for Aquaculture No.1. Dinh Bang, Tu Son, Bac Ninh, Viet Nam.
Marc CampetNeovia Asia, HCM City, Viet Nam.
Kednapat SriphairojFaculty of Natural Resources and Agro-Industry, Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus, Sakon Nakhon, Thailand.
Josiane RibolliLaboratório de Biologia e Cultivo de Peixes de Água Doce, Universidade Federal de Santa Catarina, Florianópolis, SC, Brazil.ORCID 0000-0002-5553-9973
Fernanda L de AlmeidaEmbrapa Amazônia Ocidental, Manaus, Amazonas, Brazil.
Thomas DesvignesInstitute of Neuroscience, University of Oregon, Eugene, Oregon, USA.ORCID 0000-0001-5126-8785
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, Oregon, USA.ORCID 0000-0002-5476-2137
Christabel Floi BucaoDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Marc Robinson-RechaviDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0002-3437-3329
Julien BobeINRAE, LPGP, Rennes, France.
Amaury HerpinINRAE, LPGP, Rennes, France.ORCID 0000-0002-0630-4027
Yann GuiguenINRAE, LPGP, Rennes, France.ORCID 0000-0001-5464-6219
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRCentre National de la Recherche Scientifique · FRÉcole Nationale Vétérinaire de Toulouse · FRSIB Swiss Institute of Bioinformatics · CHUniversity of Oregon · USBrazilian Agricultural Research Corporation · BRCazenovia College · USHunan Normal University · CNKasetsart University · THMinistry of Marine Affairs and Fisheries · IDMontpellier GenomiX · FRResearch Institute for Aquaculture No1 · VNUniversidade Federal de Santa Catarina · BR

Funding

Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
Mechanisms of Sex Determination in ZebrafishR35GM139635 · NIGMS · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2021 to 2025
$1.9M
Agence Nationale de la Recherche ANR-10-INBS-09Agence Nationale de la Recherche ANR-13-ISV7-0005Agence Nationale de la Recherche ANR-16-CE12-0035NIGMS NIH HHS R35 GM139635NIH HHS R01 OD011116NIH HHS R35 GM139635
6 · The paper itself

Abstract

The evolution of sex determination (SD) in teleosts is amazingly dynamic, as reflected by the variety of different master sex-determining genes identified. Pangasiids are economically important catfishes in South Asian countries, but little is known about their SD system. Here, we generated novel genomic resources for 12 Pangasiids and characterized their SD system. Based on a Pangasianodon hypophthalmus chromosome-scale genome assembly, we identified an anti-Müllerian hormone receptor type Ⅱ gene (amhr2) duplication, which was further characterized as being sex-linked in males and expressed only in testes. These results point to a Y chromosome male-specific duplication (amhr2by) of the autosomal amhr2a. Sequence annotation revealed that the P. hypophthalmus Amhr2by is truncated in its N-terminal domain, lacking the cysteine-rich extracellular part of the receptor that is crucial for ligand binding, suggesting a potential route for its neofunctionalization. Reference-guided assembly of 11 additional Pangasiids, along with sex-linkage studies, revealed that this truncated amhr2by duplication is a male-specific conserved gene in Pangasiids. Reconstructions of the amhr2 phylogeny suggested that amhr2by arose from an ancient duplication/insertion event at the root of the Siluroidei radiation that is dated to ~100 million years ago. Together these results bring multiple lines of evidence supporting that amhr2by is an ancient and conserved master sex-determining gene in Pangasiids, a finding that highlights the recurrent use of the transforming growth factor β pathway, which is often used for the recruitment of teleost master SD genes, and provides another empirical case towards firther understanding of dynamics of SD systems.

Indexed as

CatfishesAnimalsMalePhylogenyReceptors, PeptideReceptors, Transforming Growth Factor betaY Chromosomeanti-Mullerian hormone receptorReceptors, PeptideReceptors, Transforming Growth Factor betaamhr2evolutionmale genome assemblypangasiid catfishessex determination

Identifiers

PMID35429227
PMCPMC9555307
OpenAlexW4225682621

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.