Evidence map›Paper›PMID 35429225›Full record

ArticleThe FEBS journal2022

pH dependencies of glycolytic enzymes of yeast under in vivo-like assay conditions.

Laura Luzia, David Lao-Martil, Philipp Savakis, Johan van Heerden, Natal van Riel, Bas Teusink

Abstract read
In one paragraph

Article in The FEBS journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Laura LuziaSystems Biology Lab, VU Amsterdam, Netherlands.
David Lao-MartilDepartment of Biomedical Engineering, TU Eindhoven, Netherlands.
Philipp SavakisSystems Biology Lab, VU Amsterdam, Netherlands.
Johan van HeerdenSystems Biology Lab, VU Amsterdam, Netherlands.
Natal van RielDepartment of Biomedical Engineering, TU Eindhoven, Netherlands.
Bas TeusinkSystems Biology Lab, VU Amsterdam, Netherlands.ORCID 0000-0003-3929-0423

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Under carbon source transitions, the intracellular pH of Saccharomyces cerevisiae is subject to change. Dynamics in pH modulate the activity of the glycolytic enzymes, resulting in a change in glycolytic flux and ultimately cell growth. To understand how pH affects the global behavior of glycolysis and ethanol fermentation, we measured the activity of the glycolytic and fermentative enzymes in S. cerevisiae under in vivo-like conditions at different pH. We demonstrate that glycolytic enzymes exhibit differential pH dependencies, and optima, in the pH range observed during carbon source transitions. The forward reaction of GAPDH shows the highest decrease in activity, 83%, during a simulated feast/famine regime upon glucose removal (cytosolic pH drop from 7.1 to 6.4). We complement our biochemical characterization of the glycolytic enzymes by fitting the V

Indexed as

GlycolysisSaccharomyces cerevisiaeCarbonEthanolGlucoseHydrogen-Ion ConcentrationCarbonEthanolGlucoseenzyme kinetics modelingnutrient dynamicspH dependencyprogression curve analysisyeast glycolysis

Identifiers

PMID35429225
PMCPMC9790636

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.