Evidence map›Paper›PMID 35426219›Full record

ArticleCancer medicine2022

Identity of MMP1 and its effects on tumor progression in head and neck squamous cell carcinoma.

Gehou Zhang, Tieqi Li, Guolin Tan, Yexun Song, Qian Liu, Kai Wang, Jingang Ai, Zheng Zhou, Wei Li

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Gehou ZhangDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Tieqi LiDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Guolin TanDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Yexun SongDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.ORCID 0000-0002-1393-2881
Qian LiuDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Kai WangDepartment of Otolaryngology-Head Neck Surgery, The First Affiliated Hospital of Shaoyang University, Shaoyang, China.
Jingang AiDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Zheng ZhouDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.
Wei LiDepartment of Otolaryngology-Head Neck Surgery, Third Xiangya Hospital of Central South University, Changsha, Hunan Province, China.ORCID 0000-0001-9911-2384
Central South University · CNShaoyang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHead and neck squamous cell carcinoma (HNSCC) is the sixth most common malignant tumor worldwide with high morbidity and mortality. However, the diagnosis and molecular mechanisms of HNSCC remains poor.

methodsRobust rank aggregation method was performed to excavate the differentially expressed genes (DEGs) in five datasets (GSE6631, GSE13601, GSE23036, GSE30784, GSE107591) from the Gene Expression Omnibus. Search Tool for the Retrieval of Interacting Genes (STRING) database extracted hub genes from the protein-protein interaction network. The expression of the hub genes was validated using expression profile from The Cancer Genome Atlas and Oncomine database. The module analysis and disease-free survival analysis of the hub genes were analyzed by Cytoscape and the Kaplan-Meier curve, respectively. The expression of hub genes was verified in clinical specimens. The functions of MMP1 which is most important in hub genes were explored in vitro and in vivo.

resultsTotally, 235 DEGs were identified in the present study which consists of 103 up-regulated and 132 down-regulated genes which were significantly enriched in the molecular function of calcium ion binding followed in the biological process of skin development. The mainly enriched pathways were ECM (extracellular matrix)-receptor interaction (hsa04512) and protein digestion and absorption (hsa04974). Six hub genes were screened out which showed dramatically increased expression in HNSCC samples compared with normal samples, including COL4A1, MMP1, PLAU, RBP1, SEMA3C, and COL4A2. These hub genes all showed worse disease-free survival with higher expression and were up-regulated in HNSCC clinical samples. MMP1 was proved to promote cell growth, migration, and phosphorylation of AKT in vitro and to promote liver metastasis in vivo.

conclusionBioinformatics analysis identified six key genes in HNSCC. Of these, MMP1 is the most likely biomarker. It activates the AKT pathway and promotes tumor progression.

Indexed as

Head and Neck NeoplasmsMatrix Metalloproteinase 1Squamous Cell Carcinoma of Head and NeckBiomarkers, TumorComputational BiologyGene Expression ProfilingGene Expression Regulation, NeoplasticHumansPrognosisProto-Oncogene Proteins c-aktBiomarkers, TumorMatrix Metalloproteinase 1MMP1 protein, humanProto-Oncogene Proteins c-aktdifferentially expressed geneshead and neck squamous cell carcinomahub genesintegrated bioinformatics analysisMMP1

Identifiers

PMID35426219
PMCPMC9189457
OpenAlexW4224059768

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.