ReviewJournal of medical primatology2022
Multi-site proficiency testing for validation and standardization of assays to detect specific pathogen-free viruses, coronaviruses, and other agents in nonhuman primates.
JoAnn L Yee, Richard Grant, Andrew J Haertel, Carolina Allers, Amanda B Carpenter, Koen K A Van Rompay, Jeffrey A Roberts
Open access · greenAbstract readReview
In one paragraphReview in Journal of medical primatology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 60% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
2 · The registryThe trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
3 · Its place in the literatureWho cites it
0 citing papers in PubMed, 2 citations in OpenAlex.
No citing paper in PubMed yet.
4 · The recordCorrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
5 · Who and what moneyAuthors and funding
7 authors at 4 institutions in 1 country.
JoAnn L YeePrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, California, USA.ORCID 0000-0002-5514-9836 Richard GrantPrimate Pathogen Detection Services Laboratory, Washington National Primate Research Center, University of Washington, Seattle, Washington, USA.
Andrew J HaertelOregon National Primate Research Center, Oregon Health Science University, Beaverton, Oregon, USA.ORCID 0000-0002-1090-8253 Carolina AllersPathogen Detection and Quantification Core, Tulane National Primate Research Center, Tulane University, Covington, Louisiana, USA.
Amanda B CarpenterPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, California, USA.
Koen K A Van RompayPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, California, USA.
Jeffrey A RobertsPrimate Assay Laboratory, California National Primate Research Center, University of California, Davis, California, USA.
Primate Conservation · USOregon National Primate Research Center · USTulane University · USUniversity of Washington · US
Funding
Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9MWashington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8MNational Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5MTulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4MWaNPRC Macaca nemestrina SPF Breeding ColonyU42OD011123 · OD · UNIVERSITY OF WASHINGTON · PI CHARLOTTE HOTCHKISS · 2012 to 2026
$34.4MViral Testing CoreU42OD024282 · OD · TULANE UNIVERSITY OF LOUISIANA · PI KASI E RUSSELL-LODRIGUE · 2017 to 2026
$25.7MPhase 2 Enhancement of Outdoor Group Housing for U42 SPF 9 Rhesus MacaquesU42OD023038 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI RUDOLF Paul BOHM, Lauren Drew Martin · 2016 to 2026
$21.9MViral Testing Core - Maintenance of an SPF Macaque Breeding Colony for AIDS ResearchU42OD010568 · OD · TULANE UNIVERSITY OF LOUISIANA · PI KASI E RUSSELL-LODRIGUE · 2013 to 2026
$21.7MViral Testing CoreU42OD010990 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Rhonda S Oates, Jeffrey A Roberts · 2012 to 2026
$20.1MViral Testing CoreU42OD010426 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Andrew Haertel, Lauren Drew Martin · 2013 to 2026
$6.0MNIH HHS P51 OD010425NIH HHS P51 OD011092NIH HHS P51 OD011104NIH HHS P51 OD011107NIH HHS U42 OD010426NIH HHS U42 OD010568NIH HHS U42 OD010990NIH HHS U42 OD011123NIH HHS U42 OD023038NIH HHS U42 OD024282NIH Office of Research Infrastructure Programs 5U42OD010990NIH Office of Research Infrastructure Programs P51OD010425NIH Office of Research Infrastructure Programs P51OD011104NIH Office of Research Infrastructure Programs U420D011123NIH Office of Research Infrastructure Programs U42OD010568ODCDC CDC HHS P51 OD011092ODCDC CDC HHS U42 OD024282
6 · The paper itselfAbstract
In efforts to increase rigor and reproducibility, the USA National Primate Research Centers (NPRCs) have focused on qualification of reagents, cross-laboratory validations, and proficiency testing for methods to detect infectious agents and accompanying immune responses in nonhuman primates. The pathogen detection working group, comprised of laboratory scientists, colony managers, and leaders from the NPRCs, has championed the effort to produce testing that is reliable and consistent across laboratories. Through multi-year efforts with shared proficiency samples, testing percent agreement has increased from as low as 67.1% for SRV testing in 2010 to 92.1% in 2019. The 2019 average agreement for the four basic SPF agents improved to >96% (86.5% BV, 98.9 SIV, 92.1 SRV, and 97.0 STLV). As new pathogens such as SARS coronavirus type 2 emerge, these steps can now be quickly replicated to develop and implement new assays that ensure rigor, reproducibly, and quality for NHP pathogen detection.
Indexed as
Simian T-lymphotropic virus 1AnimalsPrimatesReference StandardsReproducibility of ResultsSpecific Pathogen-Free OrganismsPCRproficiency testingserologyspecific pathogen-freevirus
Identifiers
PMID35426147
PMCPMC9851150
OpenAlexW4223921426
What OpenQuestion holds
Textmetadata
LicenceTDM
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