Evidence map›Paper›PMID 35426058›Full record

ArticleEnvironmental monitoring and assessment2022

Evaluation of crAssphage as a human-specific microbial source-tracking marker in the Republic of Korea.

Su Jin Nam, Wen Si Hu, Ok Kyung Koo

Abstract read
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In one paragraph

Article in Environmental monitoring and assessment, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Tools and methodology toFrontiers in microbiology · 2024
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Su Jin NamDepartment of Food and Nutrition, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Wen Si HuDepartment of Food Science and Engineering, Liaocheng University, Liaocheng, 252059, China.
Ok Kyung KooDepartment of Food Science, Chungnam National University, Daejeon, 34134, Republic of Korea. okoo@cnu.ac.kr.ORCID http://orcid.org/0000-0002-9328-8626

Funding

National Research Foundation of Korea 2019R1C1C100242713
6 · The paper itself

Abstract

CrAssphage is a novel and by far the most abundant bacteriophage in the human gut and has been proposed as a human-specific microbial source tracking (MST) marker. However, its global use as a human-specific MST marker requires validation in more extensive regions. The purpose of this study was to evaluate the specificity and abundance of the human-specific MST marker crAssphage with PCR and RT-PCR assays in human and animal feces in Korea. The prevalence of crAssphage was confirmed in 94 human feces samples (subjects: 19 to 45 years old) and 56 animal feces samples (from birds, raccoons, squirrels, weasels, deer, wild boars, hares, cats, and dogs). CrAssphage showed sensitivity of 0.39 and specificity of 1.00 in Korea, with a sequencing analysis showing that genotype II was dominant at 71.9%. The quantitative analysis showed that crAssphage is sufficiently abundant in human feces given the high concentration range of 4.26 to 8.25 log gene copies (GC)/ng in human feces. In conclusion, this study confirmed the crAssphage as a specific and abundant MST marker with which to identify human fecal contamination in Korea.

Indexed as

BacteriophagesDeerAnimalsBiomarkersDogsEnvironmental MonitoringFecesHumansSewageWater MicrobiologyWater PollutionBiomarkersSewageCrAssphageDetectionFecesMicrobial source trackingReal-time PCR

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.