Evidence map›Paper›PMID 35424772›Full record

ArticleRSC advances2022

Significant structural change in human c-Myc promoter G-quadruplex upon peptide binding in potassium.

Nikita Kundu, Taniya Sharma, Sarvpreet Kaur, Mamta Singh, Vinit Kumar, Uttam Sharma, Aklank Jain, Jadala Shankaraswamy, Daisuke Miyoshi, Sarika Saxena

Open access · goldAbstract read
In one paragraph

Article in RSC advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Nikita KunduAmity Institute of Biotechnology, Amity University Uttar Pradesh, Structural Biology Lab Sector-125, Expressway Highway Noida 201313 India ssaxena1@amity.edu sarikaigib@yahoo.co.in +91-120-4735600.
Taniya SharmaAmity Institute of Biotechnology, Amity University Uttar Pradesh, Structural Biology Lab Sector-125, Expressway Highway Noida 201313 India ssaxena1@amity.edu sarikaigib@yahoo.co.in +91-120-4735600.
Sarvpreet KaurAmity Institute of Biotechnology, Amity University Uttar Pradesh, Structural Biology Lab Sector-125, Expressway Highway Noida 201313 India ssaxena1@amity.edu sarikaigib@yahoo.co.in +91-120-4735600.
Mamta SinghAmity Institute of Molecular Medicine and Stem Cell Research, Amity University Uttar Pradesh Noida 201313 India.
Vinit KumarAmity Institute of Molecular Medicine and Stem Cell Research, Amity University Uttar Pradesh Noida 201313 India.
Uttam SharmaDepartment of Animal Sciences, Central University of Punjab Bathinda India.
Aklank JainDepartment of Animal Sciences, Central University of Punjab Bathinda India.
Jadala ShankaraswamyDepartment of Fruit Science, College of Horticulture, Mojerla, Sri Konda Laxman Telangana State Horticultural University 509382 Telangana India.
Daisuke MiyoshiFaculty of Frontiers of Innovative Research in Science and Technology (FIRST), Konan University 7-1-20 Minatojima-minamimachi, Chuo-ku, Kobe Hyogo 650-0047 Japan.ORCID https://orcid.org/0000-0002-4308-0499
Sarika SaxenaAmity Institute of Biotechnology, Amity University Uttar Pradesh, Structural Biology Lab Sector-125, Expressway Highway Noida 201313 India ssaxena1@amity.edu sarikaigib@yahoo.co.in +91-120-4735600.ORCID https://orcid.org/0000-0002-4082-5627
Amity University · INCentral University of Punjab · INKonan University · JPSri Konda Laxman Telangana State Horticultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We selected the G-quadruplex motif located in the nuclease-hypersensitive elements (NHE) III1 region of the c-Myc promoter and for the first time performed its interaction studies with a designed peptide (QW10). Our CD results showed that the peptide bound to the c-Myc G-quadruplex and induced a significant blue shift in the positive peak of 20 nm in KCl alone or with 40wt% PEG200 or 20wt% PEG8000 in comparison to NaCl. Our Native Gel results confirmed that peptide binding destabilized the duplex and stabilized the unimolecular G-quadruplex and not binding to i-motif. UV thermal results confirmed destabilization of bimolecular structure and stabilization of unimolecular G-quadruplex. QW10 showed preferential binding towards c-MYC promoter G4 with binding constant (

Identifiers

PMID35424772
PMCPMC8982240
OpenAlexW4224002703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.