Evidence map›Paper›PMID 35422414›Full record

ArticleBiophysical journal2022

Relationship between fitness and heterogeneity in exponentially growing microbial populations.

Anna Paola Muntoni, Alfredo Braunstein, Andrea Pagnani, Daniele De Martino, Andrea De Martino

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Anna Paola MuntoniPolitecnico di Torino, Corso Duca degli Abruzzi, 24, I-10129, Torino, Italy; Italian Institute for Genomic Medicine, IRCCS Candiolo, SP-142, I-10060, Candiolo (TO), Italy.
Alfredo BraunsteinPolitecnico di Torino, Corso Duca degli Abruzzi, 24, I-10129, Torino, Italy; Italian Institute for Genomic Medicine, IRCCS Candiolo, SP-142, I-10060, Candiolo (TO), Italy; INFN, Sezione di Torino, Torino, Italy.
Andrea PagnaniPolitecnico di Torino, Corso Duca degli Abruzzi, 24, I-10129, Torino, Italy; Italian Institute for Genomic Medicine, IRCCS Candiolo, SP-142, I-10060, Candiolo (TO), Italy; INFN, Sezione di Torino, Torino, Italy.
Daniele De MartinoBiofisika Institute (CSIC, UPV-EHU) and Ikerbasque Basque Foundation for Science, Bilbao 48013, Spain. Electronic address: daniele.demartino@ehu.eus.
Andrea De MartinoPolitecnico di Torino, Corso Duca degli Abruzzi, 24, I-10129, Torino, Italy; Italian Institute for Genomic Medicine, IRCCS Candiolo, SP-142, I-10060, Candiolo (TO), Italy; Istituto di Nanotecnologia (CNR-NANOTEC), Consiglio Nazionale delle Ricerche, I-00185 Roma, Italy. Electronic address: andrea.demartino@polito.it.
Politecnico di Torino · ITIkerbasque · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite major environmental and genetic differences, microbial metabolic networks are known to generate consistent physiological outcomes across vastly different organisms. This remarkable robustness suggests that, at least in bacteria, metabolic activity may be guided by universal principles. The constrained optimization of evolutionarily motivated objective functions, such as the growth rate, has emerged as the key theoretical assumption for the study of bacterial metabolism. While conceptually and practically useful in many situations, the idea that certain functions are optimized is hard to validate in data. Moreover, it is not always clear how optimality can be reconciled with the high degree of single-cell variability observed in experiments within microbial populations. To shed light on these issues, we develop an inverse modeling framework that connects the fitness of a population of cells (represented by the mean single-cell growth rate) to the underlying metabolic variability through the maximum entropy inference of the distribution of metabolic phenotypes from data. While no clear objective function emerges, we find that, as the medium gets richer, the fitness and inferred variability for Escherichia coli populations follow and slowly approach the theoretically optimal bound defined by minimal reduction of variability at given fitness. These results suggest that bacterial metabolism may be crucially shaped by a population-level trade-off between growth and heterogeneity.

Indexed as

Escherichia coliMetabolic Networks and PathwaysBacteriaEntropyPhenotype

Identifiers

PMID35422414
PMCPMC9199093
OpenAlexW3149660453

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.