Evidence map›Paper›PMID 35420640›Full record

ArticleThe Journal of cell biology2022

Optogenetic activators of apoptosis, necroptosis, and pyroptosis.

Kateryna Shkarina, Eva Hasel de Carvalho, José Carlos Santos, Saray Ramos, Maria Leptin, Petr Broz

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Dilating the aging clock with light.Innovation (Cambridge (Mass.)) · 2026
    Review
  3. Article
  4. Chemical reviews · 2026
    Review
  5. Review
  6. Pyroptosis: Turning Up the Heat on Cancer.Annual review of immunology · 2026
    Review
  7. Article
  8. Review
  9. Pore size dynamics control complex volume swelling in pyroptosis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Review
  11. Review
  12. Review
  13. Optogenetic engineering for precision cancer immunotherapy.Trends in pharmacological sciences · 2025
    Review
  14. Article
  15. The Regulatory Mechanisms of Treponema pallidum Enolase on Macrophages: From Enzymatic Activity to Signal Transduction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  16. Article
  17. Article
  18. CCDC134 controls TLR biogenesis through the ER chaperone Gp96.The Journal of experimental medicine · 2025
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kateryna ShkarinaDepartment of Biochemistry, University of Lausanne, Epalinges, Switzerland.ORCID 0000-0002-2177-4844
Eva Hasel de CarvalhoDirector's Research, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0002-3067-2874
José Carlos SantosDepartment of Biochemistry, University of Lausanne, Epalinges, Switzerland.ORCID 0000-0002-3446-4001
Saray RamosDepartment of Biochemistry, University of Lausanne, Epalinges, Switzerland.ORCID 0000-0001-6015-9310
Maria LeptinDirector's Research, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0001-7097-348X
Petr BrozDepartment of Biochemistry, University of Lausanne, Epalinges, Switzerland.ORCID 0000-0002-2334-7790
University of Lausanne · CHEuropean Molecular Biology Laboratory · DE

Funding

ERC ERC2017-CoG-770988-InflamCellDeathNovartisOPO StiftungSwiss National Science Foundation 175576
6 · The paper itself

Abstract

Targeted and specific induction of cell death in an individual or groups of cells hold the potential for new insights into the response of tissues or organisms to different forms of death. Here, we report the development of optogenetically controlled cell death effectors (optoCDEs), a novel class of optogenetic tools that enables light-mediated induction of three types of programmed cell death (PCD)-apoptosis, pyroptosis, and necroptosis-using Arabidopsis thaliana photosensitive protein Cryptochrome-2. OptoCDEs enable a rapid and highly specific induction of PCD in human, mouse, and zebrafish cells and are suitable for a wide range of applications, such as sub-lethal cell death induction or precise elimination of single cells or cell populations in vitro and in vivo. As the proof-of-concept, we utilize optoCDEs to assess the differences in neighboring cell responses to apoptotic or necrotic PCD, revealing a new role for shingosine-1-phosphate signaling in regulating the efferocytosis of the apoptotic cell by epithelia.

Indexed as

ApoptosisNecroptosisOptogeneticsPyroptosisAnimalsArabidopsisCryptochromesHumansLysophospholipidsMiceSphingosineZebrafishCryptochromesLysophospholipidsSphingosinesphingosine 1-phosphate

Identifiers

PMID35420640
PMCPMC9014795
OpenAlexW4223949666

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.