Evidence map›Paper›PMID 35420440›Full record

ArticleJournal of virology2022

Movements of Ancient Human Endogenous Retroviruses Detected in SOX2-Expressing Cells.

Kazuaki Monde, Yorifumi Satou, Mizuki Goto, Yoshikazu Uchiyama, Jumpei Ito, Taku Kaitsuka, Hiromi Terasawa, Nami Monde, Shinya Yamaga, Tomoya Matsusako and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Kazuaki MondeDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.ORCID 0000-0002-8314-5306
Yorifumi SatouJoint Research Center for Human Retrovirus Infection, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.ORCID 0000-0002-1495-7810
Mizuki GotoDepartment of Cell Modulation, Institute of Molecular Embryology and Genetics (IMEG), Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Yoshikazu UchiyamaDepartment of Medical Image Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Jumpei ItoDivision of Human Genetics, National Institute of Genetics, Shizuoka, Japan.
Taku KaitsukaSchool of Pharmacy at Fukuoka, International University of Health and Welfare, Okawa, Fukuoka, Japan.
Hiromi TerasawaDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Nami MondeDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Shinya YamagaDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Tomoya MatsusakoDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Fan-Yan WeiDepartment of Molecular Physiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Ituro InoueDivision of Human Genetics, National Institute of Genetics, Shizuoka, Japan.
Kazuhito TomizawaDepartment of Molecular Physiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Akira OnoDepartment of Microbiology and Immunology, University of Michigan Medical Schoolgrid.471406.0, Ann Arbor, Michigan, USA.ORCID 0000-0001-7841-851X
Takumi EraDepartment of Cell Modulation, Institute of Molecular Embryology and Genetics (IMEG), Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Tomohiro SawaDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.
Yosuke MaedaDepartment of Microbiology, Faculty of Life Sciences, Kumamoto Universitygrid.274841.c, Kumamoto, Japan.ORCID 0000-0001-6441-4067
Kumamoto University · JPNational Institute of Genetics · JPFukuoka International University · JPUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human endogenous retroviruses (HERVs) occupy approximately 8% of the human genome. HERVs, transcribed in early embryos, are epigenetically silenced in somatic cells, except under pathological conditions. HERV-K is thought to protect embryos from exogenous viral infection. However, uncontrolled HERV-K expression in somatic cells has been implicated in several diseases. Here, we show that SOX2, which plays a key role in maintaining the pluripotency of stem cells, is critical for HERV-K LTR5Hs. HERV-K undergoes retrotransposition within producer cells in the absence of Env expression. Furthermore, we identified new HERV-K integration sites in long-term culture of induced pluripotent stem cells that express SOX2. These results suggest that the strict dependence of HERV-K on SOX2 has allowed HERV-K to protect early embryos during evolution while limiting the potentially harmful effects of HERV-K retrotransposition on host genome integrity in these early embryos.

Indexed as

Endogenous RetrovirusesInduced Pluripotent Stem CellsSOXB1 Transcription FactorsHumansTerminal Repeat SequencesVirus IntegrationSOX2 protein, humanSOXB1 Transcription FactorsHERViPSCLTRretrotransposonSOX2teratocarcinoma

Identifiers

PMID35420440
PMCPMC9093106
OpenAlexW4225346239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.