Evidence map›Paper›PMID 35416697›Full record

ArticleMicrobiology spectrum2022

Development of the First Tractable Genetic System for Parvimonas micra, a Ubiquitous Pathobiont in Human Dysbiotic Disease.

Dustin L Higashi, Sean McGuire, Yasser M Abdelrahman, Zhengzhong Zou, Hua Qin, David Anderson, Elizabeth A Palmer, Jens Kreth, Justin Merritt

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  3. Complete genome sequence ofMicrobiology resource announcements · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Dustin L HigashiDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Sean McGuireDepartment of Pediatric Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Yasser M AbdelrahmanDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Zhengzhong ZouDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Hua QinDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
David AndersonDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Elizabeth A PalmerDepartment of Pediatric Dentistry, Oregon Health and Science University, Portland, Oregon, USA.
Jens KrethDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.ORCID 0000-0002-8599-8310
Justin MerrittDepartment of Restorative Dentistry, Oregon Health and Science University, Portland, Oregon, USA.ORCID 0000-0002-3464-0490
Oregon Health & Science University · USCairo University · EG

Funding

Advancing studies of polymicrobial diseases via streptococcal geneticsR35DE028252 · NIDCR · OREGON HEALTH & SCIENCE UNIVERSITY · PI MERRITT, JUSTIN · 2018 to 2025
$7.8M
Pyruvate oxidase: a molecular determinant of commensalism among the oral microbiomeR01DE029492 · NIDCR · OREGON HEALTH & SCIENCE UNIVERSITY · PI KRETH, JENS · 2020 to 2024
$2.5M
Streptococcal secretion of pyruvate - a novel antioxidant strategy in the oral biofilmR21DE029612 · NIDCR · OREGON HEALTH & SCIENCE UNIVERSITY · PI KRETH, JENS · 2020 to 2021
$424k
NIDCR NIH HHS R01 DE029492NIDCR NIH HHS R21 DE029612NIDCR NIH HHS R35 DE028252
6 · The paper itself

Abstract

Parvimonas micra is a Gram-positive obligate anaerobe and a typical member of the human microbiome. P. micra is among the most highly enriched species at numerous sites of mucosal dysbiotic disease and is closely associated with the development of multiple types of malignant tumors. Despite its strong association with disease, surprisingly little is known about P. micra pathobiology, which is directly attributable to its longstanding genetic intractability. To address this problem, we directly isolated a collection of P. micra strains from odontogenic abscess clinical specimens and then screened these isolates for natural competence. Amazingly, all of the P. micra clinical isolates exhibited various levels of natural competence, including the reference strain ATCC 33270. By exploiting this ability, we were able to employ cloning-independent methodologies to engineer and complement a variety of targeted chromosomal genetic mutations directly within low-passage-number clinical isolates. To develop a tractable genetic system for P. micra, we first adapted renilla-based bioluminescence for highly sensitive reporter studies. This reporter system was then applied for the development of the novel Theo+ theophylline-inducible riboswitch for tunable gene expression studies over a broad dynamic range. Finally, we demonstrate the feasibility of generating

Indexed as

BacillotaGram-Positive BacteriaCarcinogenesisHumansgeneticsGram-positive bacterianatural competenceParvimonas micra

Identifiers

PMID35416697
PMCPMC9045310
OpenAlexW4225886107

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.