Evidence map›Paper›PMID 35414716›Full record

ArticleThe ISME journal2022

Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel_I_6 consumes alpha-mannan from fungi.

Vipul Solanki, Karen Krüger, Conor J Crawford, Alonso Pardo-Vargas, José Danglad-Flores, Kim Le Mai Hoang, Leeann Klassen, D Wade Abbott, Peter H Seeberger, Rudolf I Amann and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  6. Activity-Based Tracking of Glycan Turnover in Microbiomes.Journal of the American Chemical Society · 2025
    Article
  7. International journal of molecular sciences · 2025
    Article
  8. Automated Synthesis of Algal Fucoidan Oligosaccharides.Journal of the American Chemical Society · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Vipul SolankiMax Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.
Karen KrügerMax Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.ORCID http://orcid.org/0000-0001-7579-8414
Conor J CrawfordMax Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.ORCID http://orcid.org/0000-0002-1314-1019
Alonso Pardo-VargasMax Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
José Danglad-FloresMax Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
Kim Le Mai HoangMax Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
Leeann KlassenLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 1st Avenue South, Lethbridge, AB, T1J 4B1, Canada.
D Wade AbbottLethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 1st Avenue South, Lethbridge, AB, T1J 4B1, Canada.
Peter H SeebergerMax Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
Rudolf I AmannMax Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany.ORCID http://orcid.org/0000-0002-0846-7372
Hanno TeelingMax Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany. hteeling@mpi-bremen.de.ORCID http://orcid.org/0000-0003-1889-7859
Jan-Hendrik HehemannMax Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359, Bremen, Germany. jheheman@mpi-bremen.de.ORCID http://orcid.org/0000-0002-8700-2564
Max Planck Institute of Colloids and Interfaces · DEMax Planck Institute for Marine Microbiology · DEAgriculture and Agri-Food Canada · CAUniversity of Bremen · DE

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) H2020-MSCA-IF-2020Max-Planck-Gesellschaft (Max Planck Society) AM 73/9-1Max-Planck-Gesellschaft (Max Planck Society) HE 7217/1-1Max-Planck-Gesellschaft (Max Planck Society) TE 813/2- 1Max-Planck-Gesellschaft (Max Planck Society) TE 813/2-1
6 · The paper itself

Abstract

Microbial glycan degradation is essential to global carbon cycling. The marine bacterium Salegentibacter sp. Hel_I_6 (Bacteroidota) isolated from seawater off Helgoland island (North Sea) contains an α-mannan inducible gene cluster with a GH76 family endo-α-1,6-mannanase (ShGH76). This cluster is related to genetic loci employed by human gut bacteria to digest fungal α-mannan. Metagenomes from the Hel_I_6 isolation site revealed increasing GH76 gene frequencies in free-living bacteria during microalgae blooms, suggesting degradation of α-1,6-mannans from fungi. Recombinant ShGH76 protein activity assays with yeast α-mannan and synthetic oligomannans showed endo-α-1,6-mannanase activity. Resolved structures of apo-ShGH76 (2.0 Å) and of mutants co-crystalized with fungal mannan-mimicking α-1,6-mannotetrose (1.90 Å) and α-1,6-mannotriose (1.47 Å) retained the canonical (α/α)

Indexed as

Glycoside HydrolasesMannansBacteroidetesEcosystemFungiHumansGlycoside HydrolasesMannans

Identifiers

PMID35414716
PMCPMC9213526
OpenAlexW4223487095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.