Evidence map›Paper›PMID 35413960›Full record

ArticleNature communications2022

The crystal structure of iC3b-CR3 αI reveals a modular recognition of the main opsonin iC3b by the CR3 integrin receptor.

Francisco J Fernández, Jorge Santos-López, Rubén Martínez-Barricarte, Javier Querol-García, Héctor Martín-Merinero, Sergio Navas-Yuste, Martin Savko, William E Shepard, Santiago Rodríguez de Córdoba, M Cristina Vega

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 31 citations in OpenAlex.

  1. TARGETING THE CAPSULE OFbioRxiv : the preprint server for biology · 2026
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  5. Immune Responses toJournal of inflammation research · 2026
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  7. ULK1 mediated autophagy in airway cells duringFrontiers in microbiology · 2026
    Article
  8. Review
  9. Virulence · 2025
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  10. Article
  11. Article
  12. The role of opsonophagocytosis in killing ofCurrent research in microbial sciences · 2025
    Article
  13. Article
  14. αStructure (London, England : 1993) · 2024
    Article
  15. Article
  16. αbioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Review
  19. X-Ray Crystallography for Macromolecular Complexes.Advances in experimental medicine and biology · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Francisco J FernándezCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain. fjfernandez@abvance.com.ORCID http://orcid.org/0000-0002-5015-1849
Jorge Santos-LópezCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.
Rubén Martínez-BarricarteCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.
Javier Querol-GarcíaCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.
Héctor Martín-MerineroCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.ORCID http://orcid.org/0000-0002-9094-5934
Sergio Navas-YusteCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.
Martin SavkoSynchrotron SOLEIL, L'Orme des Merisiers Saint-Aubin, 91192, Gif-sur-Yvette, France.
William E ShepardSynchrotron SOLEIL, L'Orme des Merisiers Saint-Aubin, 91192, Gif-sur-Yvette, France.
Santiago Rodríguez de CórdobaCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain.ORCID http://orcid.org/0000-0001-6401-1874
M Cristina VegaCentro de Investigaciones Biológicas Margarita Salas, Agencia Estatal Consejo Superior de Investigaciones Científicas, 28040, Madrid, Spain. cvega@cib.csic.es.ORCID http://orcid.org/0000-0003-0628-8378
Consejo Superior de Investigaciones Científicas · ESSynchrotron soleil · FR

Funding

LONGITUDINAL SCALING IN DRUG ABUSE PREVENTIONR23DA003673 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI COLLINS, LINDA M · 1985 to 1985
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6 · The paper itself

Abstract

Complement activation on cell surfaces leads to the massive deposition of C3b, iC3b, and C3dg, the main complement opsonins. Recognition of iC3b by complement receptor type 3 (CR3) fosters pathogen opsonophagocytosis by macrophages and the stimulation of adaptive immunity by complement-opsonized antigens. Here, we present the crystallographic structure of the complex between human iC3b and the von Willebrand A inserted domain of the α chain of CR3 (αI). The crystal contains two composite interfaces for CR3 αI, encompassing distinct sets of contiguous macroglobulin (MG) domains on the C3c moiety, MG1-MG2 and MG6-MG7 domains. These composite binding sites define two iC3b-CR3 αI complexes characterized by specific rearrangements of the two semi-independent modules, C3c moiety and TED domain. Furthermore, we show the structure of iC3b in a physiologically-relevant extended conformation. Based on previously available data and novel insights reported herein, we propose an integrative model that reconciles conflicting facts about iC3b structure and function and explains the molecular basis for iC3b selective recognition by CR3 on opsonized surfaces.

Indexed as

Macrophage-1 AntigenOpsonin ProteinsBinding SitesCD11b AntigenComplement C3bComplement System ProteinsHumansCD11b AntigenComplement C3bComplement System ProteinsMacrophage-1 AntigenOpsonin Proteins

Identifiers

PMID35413960
PMCPMC9005620
OpenAlexW4223468746

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.