Evidence map›Paper›PMID 35413272›Full record

ArticleCancer cell2022

Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers.

Chunhong Zheng, Joseph N Fass, Yi-Ping Shih, Andrew J Gunderson, Nelson Sanjuan Silva, Huayu Huang, Brady M Bernard, Venkatesh Rajamanickam, Joseph Slagel, Carlo B Bifulco and 4 more

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in Cancer cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06141369 (Treatment of Advanced Endocrine Tumor With Iindividualized mRNA Neoantigen Vaccine), which is not on this map. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06141369 narecruitingnot on this mapstarted 2024, after this paper: background citation

Treatment of Advanced Endocrine Tumor With Iindividualized mRNA Neoantigen Vaccine (mRNA-0523-L001)

TypeinterventionalSponsorShanghai Jiao Tong University School of MedicineRan2024 to 2027Enrolled21ConditionsAdrenal Cortical Carcinoma, Medullary Thyroid Cancer, Thymic Neuroendocrine Carcinoma, Pancreatic Neuroendocrine TumorArmsindividualized mRNA neoantigen vaccine (mRNA-0523-L001)
3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it, 131 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. HLA-II Expression Marks Activated and Clonally Expanded CD8International journal of molecular sciences · 2026
    Article
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  6. Immune Spatial Organization Predicts Distant Metastasis Risk in Aggressive Localized Prostate Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Adhesion G protein-coupled receptors.Pharmacological reviews · 2026
    Review
  15. Article
  16. Article
  17. Article
  18. Macrophage ferroptosis in hematologic malignancies: emerging mechanisms and therapeutic implications.Apoptosis : an international journal on programmed cell death · 2026
    Review
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Chunhong ZhengEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA. Electronic address: chunhong.zheng@providence.org.
Joseph N FassEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Yi-Ping ShihEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Andrew J GundersonEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Nelson Sanjuan SilvaEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Huayu HuangEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Brady M BernardEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Venkatesh RajamanickamEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Joseph SlagelEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Carlo B BifulcoEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Brian PieningEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA.
Pippa H A NewellDepartment of General Surgery, Providence Hood River Memorial Hospital, Hood River, OR 97031, USA.
Paul D HansenLiver and Pancreas Surgical Fellowship, Providence Portland Medical Center, Portland OR 97213, USA; Division of Gastrointestinal and Minimally Invasive Surgery, The Oregon Clinic, Portland, OR 97213, USA.
Eric TranEarle A. Chiles Research Institute, Providence Cancer Institute, Portland, OR 97213, USA. Electronic address: eric.tran@providence.org.
Providence Portland Medical Center · USHood Technology (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tumor-infiltrating neoantigen-reactive T cells can mediate regression of metastatic gastrointestinal cancers yet remain poorly characterized. We performed immunological screening against personalized neoantigens in combination with single-cell RNA sequencing on tumor-infiltrating lymphocytes from bile duct and pancreatic cancer patients to characterize the transcriptomic landscape of neoantigen-reactive T cells. We found that most neoantigen-reactive CD8

Indexed as

CD8-Positive T-LymphocytesGastrointestinal NeoplasmsAntigens, NeoplasmHumansLymphocytes, Tumor-InfiltratingTranscriptomeAntigens, Neoplasmadoptive cell therapybile duct cancercancer immunotherapygastrointestinal cancersneoantigenpancreatic cancersingle-cell RNA-seqtumor-infiltrating lymphocytes

Identifiers

PMID35413272
OpenAlexW4223424723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.