Evidence map›Paper›PMID 35412907›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Hereditary retinoblastoma iPSC model reveals aberrant spliceosome function driving bone malignancies.

Jian Tu, Zijun Huo, Yao Yu, Dandan Zhu, An Xu, Mo-Fan Huang, Ruifeng Hu, Ruoyu Wang, Julian A Gingold, Yi-Hung Chen and 15 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Engineering Mutation Clones in Mammalian Cells with CRISPR/Cas9.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Decoding cancer etiology with cellular reprogramming.Current opinion in genetics & development · 2025
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Rewired mNature communications · 2023
    Article
  20. Hereditary cancer syndromes.World journal of clinical oncology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 8 institutions in 3 countries.

Jian TuDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Zijun HuoDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Yao YuDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.
Dandan ZhuDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.
An XuDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.ORCID 0000-0003-1776-7972
Mo-Fan HuangDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Ruifeng HuCenter for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Ruoyu WangThe University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences at Houston, Houston, TX 77030.ORCID 0000-0002-3644-1284
Julian A GingoldDepartment of Obstetrics & Gynecology and Women's Health, Einstein/Montefiore Medical Center, Bronx, NY 10461.ORCID 0000-0002-0354-5933
Yi-Hung ChenDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Kuang-Lei TsaiThe University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences at Houston, Houston, TX 77030.
Nicolas R Forcioli-ContiCenter for Stem Cell and Regenerative Medicine, The Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Sarah X L HuangCenter for Stem Cell and Regenerative Medicine, The Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Thomas R WebbWildflower Biopharma Inc., Encinitas, CA 92024.ORCID 0000-0001-8000-0825
Jie SuAccutar Biotechnology Inc., Brooklyn, NY 11226.
Danielle A BazerDepartment of Neurology, Renaissance School of Medicine, Stony Brook University, Stony Brook, NY 11794.ORCID 0000-0001-9459-7773
Peilin JiaCenter for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030.
Jason T YusteinTexas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-2052-0527
Lisa L WangDepartment of Pediatrics, Texas Children's Hospital, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-2817-0832
Mien-Chie HungGraduate Institute of Biomedical Sciences, China Medical University, Taichung 404, Taiwan.
Zhongming ZhaoThe University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences at Houston, Houston, TX 77030.ORCID 0000-0002-3477-0914
Chad D HuffDepartment of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030.
Jingnan ShenDepartment of Musculoskeletal Oncology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, P. R. China.
Ruiying ZhaoDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.ORCID 0000-0002-3957-8913
Dung-Fang LeeDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX 77030.ORCID 0000-0003-2387-597X
The University of Texas MD Anderson Cancer Center · USThe University of Texas Health Science Center at Houston · USSun Yat-sen University · CNBaylor College of Medicine · USBrown Foundation · USAlbert Einstein College of Medicine · USAsia University · TWStony Brook School · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Transforming dbGaP genetic and genomic data to FAIR-ready by artificial intelligence and machine learning algorithmsR01LM012806 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Zhongming Zhao · 2017 to 2026
$3.7M
Dissecting and Targeting RB1-Mutant OsteosarcomaR01CA246130 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LEE, DUNG-FANG · 2021 to 2025
$2.1M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA246130NLM NIH HHS R01 LM012806
6 · The paper itself

Abstract

The RB1 gene is frequently mutated in human cancers but its role in tumorigenesis remains incompletely defined. Using an induced pluripotent stem cell (iPSC) model of hereditary retinoblastoma (RB), we report that the spliceosome is an up-regulated target responding to oncogenic stress in RB1-mutant cells. By investigating transcriptomes and genome occupancies in RB iPSC–derived osteoblasts (OBs), we discover that both E2F3a, which mediates spliceosomal gene expression, and pRB, which antagonizes E2F3a, coregulate more than one-third of spliceosomal genes by cobinding to their promoters or enhancers. Pharmacological inhibition of the spliceosome in RB1-mutant cells leads to global intron retention, decreased cell proliferation, and impaired tumorigenesis. Tumor specimen studies and genome-wide TCGA (The Cancer Genome Atlas) expression profile analyses support the clinical relevance of pRB and E2F3a in modulating spliceosomal gene expression in multiple cancer types including osteosarcoma (OS). High levels of pRB/E2F3a–regulated spliceosomal genes are associated with poor OS patient survival. Collectively, these findings reveal an undiscovered connection between pRB, E2F3a, the spliceosome, and tumorigenesis, pointing to the spliceosomal machinery as a potentially widespread therapeutic vulnerability of pRB-deficient cancers.

Indexed as

Bone NeoplasmsCarcinogenesisE2F3 Transcription FactorGene Expression Regulation, NeoplasticInduced Pluripotent Stem CellsOsteosarcomaRetinoblastoma Binding ProteinsSpliceosomesUbiquitin-Protein LigasesGenes, RetinoblastomaHumansMutationRetinal NeoplasmsRetinoblastomaE2F3 Transcription FactorRB1 protein, humanRetinoblastoma Binding ProteinsUbiquitin-Protein Ligaseshereditary retinoblastomaiPSCsosteosarcomapRBspliceosomal genes

Identifiers

PMID35412907
PMCPMC9169787
OpenAlexW4223559666

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.