ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2022
MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 21 citations in OpenAlex.
- Review
- Elucidation of the genetic architecture stabilizing the heading time in barley (Hordeum vulgare L.).Planta · 2026Article
- Current status and future perspective of genomics-assisted breeding in wheat (Breeding science · 2026Article
- Co-identification of candidate regions associated with ovule number per ovary through QTL analysis and GWAS inBreeding science · 2025Article
- Lithobiomes Heterogeneity and Geographic Distance Shape the Landscape Genomics Within Brazilian Mountain Systems.Ecology and evolution · 2025Article
- Population panmixia of the pelagic shrimp Lucensosergia lucens between Japanese and Taiwanese waters in the western North Pacific.Scientific reports · 2025Article
- Genome-wide SNP discovery and phylogeography of sandlances (Ammodytes japonicus and Ammodytes heian) in the Northwest pacific by MIG-Seq with evolutionary implications.Scientific reports · 2025Article
- Phenotypic simulation for fruit-related traits in FMolecular genetics and genomics : MGG · 2025Article
- A low-cost dpMIG-seq method for elucidating complex inheritance in polysomic crops: a case study in tetraploid blueberry.Horticulture research · 2024Article
- A chromosome-scale genome assembly of Timorese crabgrass (Digitaria radicosa): a useful genomic resource for the Poaceae.G3 (Bethesda, Md.) · 2024Article
- Article
- The genetic structure and demographic history ofEcology and evolution · 2023Article
- Utilization of Genotyping-by-Sequencing (GBS) for Rice Pre-Breeding and Improvement: A Review.Life (Basel, Switzerland) · 2022Review
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
Abstract
MIG-seq (Multiplexed inter-simple sequence repeats genotyping by sequencing) has been developed as a low cost genotyping technology, although the number of polymorphisms obtained is assumed to be minimal, resulting in the low application of this technique to analyses of agricultural plants. We applied MIG-seq to 12 plant species that include various crops and investigated the relationship between genome size and the number of bases that can be stably sequenced. The genome size and the number of loci, which can be sequenced by MIG-seq, are positively correlated. This is due to the linkage between genome size and the number of simple sequence repeats (SSRs) through the genome. The applicability of MIG-seq to population structure analysis, linkage mapping, and quantitative trait loci (QTL) analysis in wheat, which has a relatively large genome, was further evaluated. The results of population structure analysis for tetraploid wheat showed the differences among collection sites and subspecies, which agreed with previous findings. Additionally, in wheat biparental mapping populations, over 3,000 SNPs/indels with low deficiency were detected using MIG-seq, and the QTL analysis was able to detect recognized flowering-related genes. These results revealed the effectiveness of MIG-seq for genomic analysis of agricultural plants with large genomes, including wheat.
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