Evidence map›Paper›PMID 35411997›Full record

ArticleTropical medicine & international health : TM & IH2022

Outcomes of laboratory-confirmed SARS-CoV-2 infection in the Omicron-driven fourth wave compared with previous waves in the Western Cape Province, South Africa.

Mary-Ann Davies, Reshma Kassanjee, Petro Rousseau, Erna Morden, Leigh Johnson, Wesley Solomon, Nei-Yuan Hsiao, Hannah Hussey, Graeme Meintjes, Masudah Paleker and 37 more

Open access · hybridAbstract read
In one paragraph

Article in Tropical medicine & international health : TM & IH, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 5 pooled it
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 5 syntheses or guidelines pooled it, 130 citations in OpenAlex.

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  10. A risk science perspective on vaccines.Risk analysis : an official publication of the Society for Risk Analysis · 2024
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors at 11 institutions in 2 countries.

Mary-Ann DaviesHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Reshma KassanjeeCentre for Infectious Disease Epidemiology and Research, School of Public Health and Family Medicine, University of Cape Town, Cape Town, South Africa.
Petro RousseauNational Department of Health, Pretoria, South Africa.
Erna MordenHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Leigh JohnsonCentre for Infectious Disease Epidemiology and Research, School of Public Health and Family Medicine, University of Cape Town, Cape Town, South Africa.
Wesley SolomonNational Department of Health, Pretoria, South Africa.
Nei-Yuan HsiaoDivision of Medical Virology, University of Cape Town, Cape Town, South Africa.
Hannah HusseyHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Graeme MeintjesGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Masudah PalekerHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Theuns JacobsHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Peter RaubenheimerGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Alexa HeekesHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Pierre DaneHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Jamy-Lee BamHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Mariette SmithHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Wolfgang PreiserNational Health Laboratory Service, Cape Town, South Africa.
David PienaarRural Health Services, Western Cape Government: Health, Cape Town, South Africa.
Marc MendelsonGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Jonathan NaudeMitchells Plain Hospital, Western Cape Government: Health, Cape Town, South Africa.
Neshaad SchruederTygerberg Hospital, Western Cape Government: Health, Parow, South Africa.
Ayanda MnguniKhayelitsha District Hospital, Western Cape Government: Health, Khayelitsha, South Africa.
Sue Le RouxKarl Bremer Hospital, Western Cape Government: Health, Bellville, South Africa.
Kathleen MurieWestern Cape Government: Health, Cape Town, South Africa.
Hans ProzeskyTygerberg Hospital, Western Cape Government: Health, Parow, South Africa.
Hassan MahomedDivision of Health Systems and Public Health, Department of Global Health, Stellenbosch University, Tygerberg, South Africa.
Liezel RossouwWestern Cape Government: Health, Cape Town, South Africa.
Sean WassermanGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Deborah MaughanGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Linda BolokoGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Barry SmithKarl Bremer Hospital, Western Cape Government: Health, Bellville, South Africa.
Jantjie TaljaardTygerberg Hospital, Western Cape Government: Health, Parow, South Africa.
Greg SymonsGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Ntobeko A B NtusiGroote Schuur Hospital, Western Cape Government: Health, Cape Town, South Africa.
Arifa ParkerTygerberg Hospital, Western Cape Government: Health, Parow, South Africa.
Nicole WolterNational Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Waasila JassatNational Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Cheryl CohenNational Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
Richard LessellsKwaZulu-Natal Research, Innovation & Sequencing Platform, University of KwaZulu-Natal, Durban, South Africa.
Robert J WilkinsonWellcome Centre for Infectious Disease Research in Africa, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.
Juanita ArendseWestern Cape Government: Health, Cape Town, South Africa.
Saadiq KariemWestern Cape Government: Health, Cape Town, South Africa.
Melvin MoodleyHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Milani WolmaransNational Department of Health, Pretoria, South Africa.
Keith CloeteWestern Cape Government: Health, Cape Town, South Africa.
Andrew BoulleHealth Intelligence, Western Cape Government: Health, Cape Town, South Africa.
Western Cape and South African National Departments of Health in collaboration with the National Institute for Communicable Diseases in South Africa Affiliations
Western Cape Department of Health · ZAUniversity of Cape Town · ZAWellcome Centre for Infectious Diseases Research in Africa · ZADepartment of Health · ZAGroote Schuur Hospital · ZANational Health Laboratory Service · ZAStellenbosch University · ZAGovernment of South Africa · ZATygerberg Hospital · ZAThe Francis Crick Institute · GBUniversity of KwaZulu-Natal · ZA

Funding

Observational Antiretroviral Studies In Southern Africa (OASIS) CollaborationU01AI069924 · NIAID · UNIVERSITAT BERN · PI Cleophas Chimbetete, Mary-Ann Davies · 2006 to 2026
$55.9M
B positive_A population based evaluation of expanded ART access in pregnancyR01HD080465 · NICHD · UNIVERSITY OF CAPE TOWN · PI KALK, EMMA KATE · 2014 to 2019
$4.3M
Cancer Research UK FC0010218Gates Foundation 1164272Gates Foundation 1191327Gates Foundation INV-017293Medical Research Council FC0010218NIAID NIH HHS U01 AI069924NICHD NIH HHS R01 HD080465Wellcome Trust 203135/Z/16/ZWellcome Trust 214321/Z/18/ZWellcome Trust 222574Wellcome Trust FC0010218
6 · The paper itself

Abstract

objectivesThe objective was to compare COVID-19 outcomes in the Omicron-driven fourth wave with prior waves in the Western Cape, assess the contribution of undiagnosed prior infection to differences in outcomes in a context of high seroprevalence due to prior infection and determine whether protection against severe disease conferred by prior infection and/or vaccination was maintained.

methodsIn this cohort study, we included public sector patients aged ≥20 years with a laboratory-confirmed COVID-19 diagnosis between 14 November and 11 December 2021 (wave four) and equivalent prior wave periods. We compared the risk between waves of the following outcomes using Cox regression: death, severe hospitalisation or death and any hospitalisation or death (all ≤14 days after diagnosis) adjusted for age, sex, comorbidities, geography, vaccination and prior infection.

resultsWe included 5144 patients from wave four and 11,609 from prior waves. The risk of all outcomes was lower in wave four compared to the Delta-driven wave three (adjusted hazard ratio (aHR) [95% confidence interval (CI)] for death 0.27 [0.19; 0.38]. Risk reduction was lower when adjusting for vaccination and prior diagnosed infection (aHR: 0.41, 95% CI: 0.29; 0.59) and reduced further when accounting for unascertained prior infections (aHR: 0.72). Vaccine protection was maintained in wave four (aHR for outcome of death: 0.24; 95% CI: 0.10; 0.58).

conclusionsIn the Omicron-driven wave, severe COVID-19 outcomes were reduced mostly due to protection conferred by prior infection and/or vaccination, but intrinsically reduced virulence may account for a modest reduction in risk of severe hospitalisation or death compared to the Delta-driven wave.

Indexed as

Clinical Laboratory TechniquesCOVID-19SARS-CoV-2AdultCohort StudiesCOVID-19 TestingCOVID-19 VaccinesFemaleHumansMaleSeroepidemiologic StudiesSouth AfricaYoung AdultCOVID-19 VaccinesCOVID-19Deltaimmunityomicronprior infectionsub-Saharan Africavaccination

Identifiers

PMID35411997
PMCPMC9115442
OpenAlexW4226164012

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.