Evidence map›Paper›PMID 35411389›Full record

ArticleDatabase : the journal of biological databases and curation2022

SwissBioPics-an interactive library of cell images for the visualization of subcellular location data.

Philippe Le Mercier, Jerven Bolleman, Edouard de Castro, Elisabeth Gasteiger, Parit Bansal, Andrea H Auchincloss, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Anne Estreicher and 6 more

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Philippe Le MercierSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-8528-090X
Jerven BollemanSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-7449-1266
Edouard de CastroSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-5436-7383
Elisabeth GasteigerSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0003-1829-162X
Parit BansalSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-0875-1680
Andrea H AuchinclossSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-5297-5390
Emmanuel BoutetSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-3743-4203
Lionel BreuzaSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-8075-8625
Cristina Casals-CasasSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-8769-177X
Anne EstreicherSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-6828-2508
Marc FeuermannSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-4187-2863
Damien LieberherrSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-9724-1710
Catherine RivoireSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0002-5979-8382
Ivo PedruzziSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-8561-7170
Nicole RedaschiSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0001-8890-2268
Alan BridgeSwiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.ORCID 0000-0003-2148-9135
SIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life-from the specialized muscle, neuronal and epithelial cells of animals, to the rods, cocci, clubs and spirals of prokaryotes. All cell images in SwissBioPics are drawn in Scalable Vector Graphics (SVG), with each subcellular location tagged with a unique identifier from the controlled vocabulary of subcellular locations and organelles of UniProt (https://www.uniprot.org/locations/). Users can search and explore SwissBioPics cell images through our website, which provides a platform for users to learn more about how cells are organized. A web component allows developers to embed SwissBioPics images in their own websites, using the associated JavaScript and a styling template, and to highlight subcellular locations and organelles by simply providing the web component with the appropriate identifier(s) from the UniProt-controlled vocabulary or the 'Cellular Component' branch of the Gene Ontology (www.geneontology.org), as well as an organism identifier from the National Center for Biotechnology Information taxonomy (https://www.ncbi.nlm.nih.gov/taxonomy). The UniProt website now uses SwissBioPics to visualize the subcellular locations and organelles where proteins function. SwissBioPics is freely available for anyone to use under a Creative Commons Attribution 4.0 International (CC BY 4.0) license. DATABASE URL: www.swissbiopics.org.

Indexed as

ProteinsVocabulary, ControlledAnimalsProteins

Identifiers

PMID35411389
PMCPMC9216577
OpenAlexW4221043338

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.