Evidence map›Paper›PMID 35411071›Full record

ArticleCommunications biology2022

Non-coding RNA LEVER sequestration of PRC2 can mediate long range gene regulation.

Wei Wen Teo, Xinang Cao, Chan-Shuo Wu, Hong Kee Tan, Qiling Zhou, Chong Gao, Kim Vanuytsel, Sara S Kumar, George J Murphy, Henry Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Wei Wen Teo *Cancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-3647-0253
Xinang Cao *Cancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0001-6794-0871
Chan-Shuo WuCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Hong Kee TanCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Qiling ZhouCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.
Chong GaoDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Kim VanuytselSection of Hematology and Medical Oncology, School of Medicine, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8872-0736
Sara S KumarSection of Hematology and Medical Oncology, School of Medicine, Boston University, Boston, MA, USA.
George J MurphySection of Hematology and Medical Oncology, School of Medicine, Boston University, Boston, MA, USA.
Henry YangCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-1155-8216
Li ChaiDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA. lchai@bwh.harvard.edu.ORCID http://orcid.org/0000-0003-1937-4750
Daniel G TenenCancer Science Institute of Singapore, National University of Singapore, Singapore, Singapore. daniel.tenen@nus.edu.sg.ORCID http://orcid.org/0000-0002-6423-3888
National University of Singapore · SGBoston University · USBrigham and Women's Hospital · USHarvard University · US

Funding

Transcriptional and epigenetic heterogeneity of stem/progenitor cellsP01HL131477 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI David T Scadden · 2017 to 2026
$24.6M
Transcription regulation in hematopoiesisP01HL095489 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI PARK, SHINYOUNG · 2010 to 2020
$20.1M
Mechanisms of regulation by RNA in acute myeloid leukemiaR35CA197697 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2015 to 2021
$7.1M
NCI NIH HHS R35 CA197697NHLBI NIH HHS P01 HL095489NHLBI NIH HHS P01 HL131477
6 · The paper itself

Abstract

Polycomb Repressive Complex 2 (PRC2) is an epigenetic regulator required for gene silencing during development. Although PRC2 is a well-established RNA-binding complex, the biological function of PRC2-RNA interaction has been controversial. Here, we study the gene-regulatory role of the inhibitory PRC2-RNA interactions. We report a nuclear long non-coding RNA, LEVER, which mapped 236 kb upstream of the β-globin cluster as confirmed by Nanopore sequencing. LEVER RNA interacts with PRC2 in its nascent form, and this prevents the accumulation of the H3K27 repressive histone marks within LEVER locus. Interestingly, the accessible LEVER chromatin, in turn, suppresses the chromatin interactions between the ε-globin locus and β-globin locus control region (LCR), resulting in a repressive effect on ε-globin gene expression. Our findings validate that the nascent RNA-PRC2 interaction inhibits local PRC2 function in situ. More importantly, we demonstrate that such a local process can in turn regulate the expression of neighboring genes.

Indexed as

Polycomb Repressive Complex 2RNA, Long NoncodingChromatinepsilon-GlobinsProtein BindingChromatinepsilon-GlobinsPolycomb Repressive Complex 2RNA, Long Noncoding

Identifiers

PMID35411071
PMCPMC9001699
OpenAlexW4223470904

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.