Evidence map›Paper›PMID 35410329›Full record

ArticleCommunications biology2022

Tyrosine 121 moves revealing a ligandable pocket that couples catalysis to ATP-binding in serine racemase.

Chloe R Koulouris, Sian E Gardiner, Tessa K Harris, Karen T Elvers, S Mark Roe, Jason A Gillespie, Simon E Ward, Olivera Grubisha, Robert A Nicholls, John R Atack and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Information-Rich, Dual-FunctionJournal of the American Chemical Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Chloe R KoulourisSussex Drug Discovery Centre, University of Sussex, Brighton, BN1 9QG, UK.
Sian E GardinerMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.ORCID http://orcid.org/0000-0001-7815-7321
Tessa K HarrisMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.
Karen T ElversMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.
S Mark RoeDepartment of Biochemistry and Biomedicine, University of Sussex, Brighton, BN1 9QJ, UK.ORCID http://orcid.org/0000-0002-7371-9855
Jason A GillespieMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.
Simon E WardMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.ORCID http://orcid.org/0000-0002-8745-8377
Olivera GrubishaMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK.
Robert A NichollsMRC Laboratory of Molecular Biology, Francis Crick Ave, CB2 0QH, Cambridge, UK.ORCID http://orcid.org/0000-0002-8577-8617
John R AtackMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK. AtackJ@cardiff.ac.uk.ORCID http://orcid.org/0000-0002-3410-791X
Benjamin D BaxMedicines Discovery Institute, Cardiff University, Cardiff, CF10 3AT, UK. baxb@cardiff.ac.uk.ORCID http://orcid.org/0000-0003-1940-3785
Cardiff University · GBUniversity of Sussex · GBMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council 999999Medical Research Council MC_UP_A025_1012
6 · The paper itself

Abstract

Human serine racemase (hSR) catalyses racemisation of L-serine to D-serine, the latter of which is a co-agonist of the NMDA subtype of glutamate receptors that are important in synaptic plasticity, learning and memory. In a 'closed' hSR structure containing the allosteric activator ATP, the inhibitor malonate is enclosed between the large and small domains while ATP is distal to the active site, residing at the dimer interface with the Tyr121 hydroxyl group contacting the α-phosphate of ATP. In contrast, in 'open' hSR structures, Tyr121 sits in the core of the small domain with its hydroxyl contacting the key catalytic residue Ser84. The ability to regulate SR activity by flipping Tyr121 from the core of the small domain to the dimer interface appears to have evolved in animals with a CNS. Multiple X-ray crystallographic enzyme-fragment structures show Tyr121 flipped out of its pocket in the core of the small domain. Data suggest that this ligandable pocket could be targeted by molecules that inhibit enzyme activity.

Indexed as

Racemases and EpimerasesTyrosineAdenosine TriphosphateAnimalsCatalysisSerineSerine RacemaseAdenosine TriphosphateRacemases and EpimerasesSerineSerine RacemaseTyrosine

Identifiers

PMID35410329
PMCPMC9001717
OpenAlexW4223455161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.