Evidence map›Paper›PMID 35409956›Full record

ReviewInternational journal of environmental research and public health2022

Optimizing the Retrieval of the Vital Status of Cancer Patients for Health Data Warehouses by Using Open Government Data in France.

Olivier Lauzanne, Jean-Sébastien Frenel, Mustapha Baziz, Mario Campone, Judith Raimbourg, François Bocquet

Abstract readReview
In one paragraph

Review in International journal of environmental research and public health, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. The Challenges of Implementing Comprehensive Clinical Data Warehouses in Hospitals.International journal of environmental research and public health · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Olivier LauzanneAnalytics Department & Data Factory, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.
Jean-Sébastien FrenelOncology Department, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.ORCID 0000-0002-5273-0561
Mustapha BazizAnalytics Department & Data Factory, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.
Mario CamponeOncology Department, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.
Judith RaimbourgOncology Department, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.
François BocquetAnalytics Department & Data Factory, Institut de Cancérologie de l'Ouest, F-44805 Nantes-Angers, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electronic Medical Records (EMR) and Electronic Health Records (EHR) are often missing critical information about the death of a patient, although it is an essential metric for medical research in oncology to assess survival outcomes, particularly for evaluating the efficacy of new therapeutic approaches. We used open government data in France from 1970 to September 2021 to identify deceased patients and match them with patient data collected from the Institut de Cancérologie de l'Ouest (ICO) data warehouse (Integrated Center of Oncology-the third largest cancer center in France) between January 2015 and November 2021. To meet our objective, we evaluated algorithms to perform a deterministic record linkage: an exact matching algorithm and a fuzzy matching algorithm. Because we lacked reference data, we needed to assess the algorithms by estimating the number of homonyms that could lead to false links, using the same open dataset of deceased persons in France. The exact matching algorithm allowed us to double the number of dates of death in the ICO data warehouse, and the fuzzy matching algorithm tripled it. Studying homonyms assured us that there was a low risk of misidentification, with precision values of 99.96% for the exact matching and 99.68% for the fuzzy matching. However, estimating the number of false negatives proved more difficult than anticipated. Nevertheless, using open government data can be a highly interesting way to improve the completeness of the date of death variable for oncology patients in data warehouses.

Indexed as

Data WarehousingNeoplasmsAlgorithmsElectronic Health RecordsFranceGovernmentHumansMedical Record Linkagedeterministic linkagefuzzy matchinghealth data warehousehomonymsrecord linkagevital status

Identifiers

PMID35409956
PMCPMC8998644

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.