Evidence map›Paper›PMID 35409356›Full record

ArticleInternational journal of molecular sciences2022

Single-Cell RNA-Seq Analysis of Cells from Degenerating and Non-Degenerating Intervertebral Discs from the Same Individual Reveals New Biomarkers for Intervertebral Disc Degeneration.

Hosni Cherif, Matthew Mannarino, Alain Sarabia Pacis, Jiannis Ragoussis, Oded Rabau, Jean A Ouellet, Lisbet Haglund

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 92 citations in OpenAlex.

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  4. Technical insights and implications of thoracolumbar spine and neural tissue harvesting in recently deceased organ donors: a direct anterior approach integrated into multi-organ procurement protocols.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2026
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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hosni CherifOrthopaedic Research Lab, Department of Surgery, The Research Institute of the McGill University Health Centre, McGill University, Montreal, QC H3A 0G4, Canada.ORCID 0000-0002-0703-3898
Matthew MannarinoOrthopaedic Research Lab, Department of Surgery, The Research Institute of the McGill University Health Centre, McGill University, Montreal, QC H3A 0G4, Canada.ORCID 0000-0001-7086-7396
Alain Sarabia PacisCanadian Centre for Computational Genomics, McGill University Genome Center, 740 Dr. Penfield Avenue, Montreal, QC H3A 0G4, Canada.
Jiannis RagoussisDepartment of Human Genetics, McGill University Genome Center, 740 Dr. Penfield Avenue, Montreal, QC H3A 0G4, Canada.
Oded RabauMcGill Scoliosis and Spine Group, Department of Surgery, The Research Institute of the McGill University Health Centre, McGill University, Montreal, QC H3A 0G4, Canada.ORCID 0000-0002-3169-6448
Jean A OuelletMcGill Scoliosis and Spine Group, Department of Surgery, The Research Institute of the McGill University Health Centre, McGill University, Montreal, QC H3A 0G4, Canada.
Lisbet HaglundOrthopaedic Research Lab, Department of Surgery, The Research Institute of the McGill University Health Centre, McGill University, Montreal, QC H3A 0G4, Canada.ORCID 0000-0002-1288-2149
Montreal Children's Hospital · CAMcGill Genome Centre · CAMcGill University Health Centre · CA

Funding

Arthritis Society 20-0000000063Arthritis Society 20-0000000075Arthritis Society TPF-19-0513Canada Foundation for Innovation McGill University Genome CenterCIHR CIHR MOP-119564GTP grant Genome canadaThe Louise and Alan Edwards Foundation's Edwards - Pain centre McGillThe Network for Oral and Bone Health Research McGill
6 · The paper itself

Abstract

In this study, we used single-cell transcriptomic analysis to identify new specific biomarkers for nucleus pulposus (NP) and inner annulus fibrosis (iAF) cells, and to define cell populations within non-degenerating (nD) and degenerating (D) human intervertebral discs (IVD) of the same individual. Cluster analysis based on differential gene expression delineated 14 cell clusters. Gene expression profiles at single-cell resolution revealed the potential functional differences linked to degeneration, and among NP and iAF subpopulations. GO and KEGG analyses discovered molecular functions, biological processes, and transcription factors linked to cell type and degeneration state. We propose two lists of biomarkers, one as specific cell type, including

Indexed as

ChitinasesF-Box ProteinsIntervertebral DiscIntervertebral Disc DegenerationNucleus PulposusBiomarkersCell Cycle ProteinsHumansLectins, C-TypeNerve Tissue ProteinsSequence Analysis, RNABiomarkersCell Cycle ProteinsCHI3L2 protein, humanChitinasesCLEC3A protein, humanF-Box ProteinsFBXO2 protein, humanLectins, C-TypeNerve Tissue Proteinscartilagecell biologychondrocytesdisc degenerationintervertebral discsenescencesingle cell RNA sequencingtranscription factors

Identifiers

PMID35409356
PMCPMC8999935
OpenAlexW4223483247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.